View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_13 (Length: 326)
Name: NF5011_low_13
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 38088612 - 38088449
Alignment:
| Q |
18 |
ttgtcatactgccatatgtcattcaataacatcaaactaaa-ttaaaaatctattgcaatcaaatatgcttttaaaaacaatcatttaggtggttaatca |
116 |
Q |
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| T |
38088612 |
ttgtcatactgccatatgtcattcaataacatcaaattaaaattaaaaatctattgcaatcaaatatgcttttaaaaacaatcatttaggtggtttatca |
38088513 |
T |
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| Q |
117 |
aaataattttatattatgttatcataactctcttttcaatttttctattgcgacaaatgcatcctta |
183 |
Q |
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| T |
38088512 |
---tgattttatattatgttatcataactctcttttcaatttttctattgcgacaaatgcatcctta |
38088449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 38088397 - 38088322
Alignment:
| Q |
242 |
ggagtgaagagtatggttttggttgtttggtgtatttacattggtgttgttttgtatccggagcttttagtattat |
317 |
Q |
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| T |
38088397 |
ggagtgaagagtaaggttttggttgtttggtgtatttacattggtgttgttttgtatccggggcttttagtattat |
38088322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 4846306 - 4846191
Alignment:
| Q |
19 |
tgtcatactgccatatgtcattcaataacatcaaactaaattaaaaatctattgcaatcaaatatgcttttaaaaacaatcatttaggtggttaatcaaa |
118 |
Q |
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| T |
4846306 |
tgtcatgctgccatatgtcattcaatagcagcaaactaaatggagaatcaactgcaattaaatttacttttaaaaacaatcatttaggtagttaatcaaa |
4846207 |
T |
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| Q |
119 |
ataattttatattatg |
134 |
Q |
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| T |
4846206 |
gtgattttatattatg |
4846191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 11526622 - 11526744
Alignment:
| Q |
34 |
tgtcattcaataacatcaaactaaattaaaaatctattgcaatcaaatatgcttttaaaaacaatcatttagg-tggttaatcaaaataattttatatta |
132 |
Q |
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| T |
11526622 |
tgtcattcaataacagcaaactaaattaagaatctattgcaatcaaatatgcttttaaaaacaatcatttaggttggttaatcaaaatgattttatatta |
11526721 |
T |
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| Q |
133 |
tgttatcataactctcttttcaa |
155 |
Q |
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| T |
11526722 |
tgttatcagaacgatcttttcaa |
11526744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 11526895 - 11526961
Alignment:
| Q |
252 |
gtatggttttggttgtttggtgtatt-tacattggtgttgttttgtatccggagcttttagtattat |
317 |
Q |
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| T |
11526895 |
gtatggtcttggttgtttggtgtattatacattggtgttgttttgtatccaaggcttttagtattat |
11526961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 4080398 - 4080513
Alignment:
| Q |
19 |
tgtcatactgccatatgtcattcaataacatcaaactaaattaaaaatctattgcaatcaaatatgcttttaaaaacaatcatttaggtggttaatcaaa |
118 |
Q |
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| T |
4080398 |
tgtcatgctgccatatgtcattcaatagcagcaaactaaatggagaatcaactgcaatcaaatttacttttaaaaacaatcatttaggtagttaatcaaa |
4080497 |
T |
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| Q |
119 |
ataattttatattatg |
134 |
Q |
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| T |
4080498 |
gtgattttatattatg |
4080513 |
T |
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