View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_16 (Length: 299)
Name: NF5011_low_16
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_16 |
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| [»] scaffold0777 (3 HSPs) |
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Alignment Details
Target: scaffold0777 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 1890 - 2178
Alignment:
| Q |
1 |
aaatacaatcaacacaaaagagatggttgcaactctttcttttgaacatatccaaatctgttttcaaatcaaagcatataccacatgagcttcttgagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890 |
aaatacaatcaacacaaaagagatggttgcaactctttcttttgaacatatccaaatcagttttcaaatcaaagcatataccacatgagcttcttgagga |
1989 |
T |
|
| Q |
101 |
ttcaccaattaacatcttagtggtgaattcttctggttcatcatcaatgattaatggtttcttcatcttttcttcatagctttctgaagtggatattctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |
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| T |
1990 |
ttcaccaattaacatcttagtggtgaattcttctggttcctcatcaatgattaatggtttcttcatcttttcatcgtagctttctgaagtggattttctc |
2089 |
T |
|
| Q |
201 |
tttagtttcttctgctttgcatcagagtcatgttctgactgttcttttatcactagtggcgcggagaatgagcggtgtttctccttctt |
289 |
Q |
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| T |
2090 |
tttagtttcttctgctttgcatcagagtcatgttctgacggttcttttatcactagtggcgcggagaatgagcggtgtttctccttctt |
2178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 2256 - 2340
Alignment:
| Q |
205 |
gtttcttctgctttgcatcagagtcatgttctgactgttcttttatcactagtggcgcggagaatgagcggtgtttctccttctt |
289 |
Q |
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| T |
2256 |
gtttcttctcctttgcatcagagtcatgttctgacggttcttttatcactagtggcgcggagaatgagcggtgtttctccttctt |
2340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 2418 - 2501
Alignment:
| Q |
205 |
gtttcttctgctttgcatcagagtcatgttctgactgttcttttatcactagtggcgcggagaatgagcggtgtttctccttct |
288 |
Q |
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| T |
2418 |
gtttcttctcctttgcatcagaatcatgttctgactgttcttttatcactaacggcgccgagaatgagttgtgtttctccttct |
2501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 24930042 - 24929755
Alignment:
| Q |
1 |
aaatacaatcaacacaaaagagatggttgcaactctttcttttgaacatatccaaatctgttttcaaatcaaagcatataccacatgagcttcttgagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24930042 |
aaatacaatcaacacaaaagagatggttgcaactctttcttttgaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgagga |
24929943 |
T |
|
| Q |
101 |
ttcaccaattaacatcttagtggtgaattcttctggttcatcatcaatgattaatggtttcttcatcttttcttcatagctttctgaagtggatattctc |
200 |
Q |
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|||||||||| ||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
24929942 |
ctcaccaatta-cataccagtggtgaattcttctggctcgtcatcaatgattaatggtttcttcatcttttcatcatagctttctgaagtggattttctc |
24929844 |
T |
|
| Q |
201 |
tttagtttcttctgctttgcatcagagtcatgttctgactgttcttttatcactagtggcgcggagaatgagcggtgtttctccttctt |
289 |
Q |
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|||||||| |||||||||| |||||| |||||||||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
24929843 |
tttagttttttctgctttgtatcagaatcatgttctgacggttcttttatcactagcggcgccgagaataagcggtgtttctccttctt |
24929755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 24976835 - 24976941
Alignment:
| Q |
1 |
aaatacaatcaacacaaaagagatggttgcaactctttcttttgaacatatccaaatctgttttcaaatcaaagcatataccacatgagcttcttgagga |
100 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
24976835 |
aaatacattcaacacaaaagaggtggttgcaactctttcttttgaacatatctgaatctgttttcaaatcaaagcatataccacataagcttcgtgagga |
24976934 |
T |
|
| Q |
101 |
ttcacca |
107 |
Q |
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||||||| |
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| T |
24976935 |
ttcacca |
24976941 |
T |
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