View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5011_low_18 (Length: 282)

Name: NF5011_low_18
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5011_low_18
NF5011_low_18
[»] chr6 (3 HSPs)
chr6 (89-234)||(27929225-27929370)
chr6 (89-234)||(988317-988462)
chr6 (89-234)||(983624-983768)
[»] chr8 (2 HSPs)
chr8 (89-234)||(1996558-1996706)
chr8 (89-234)||(2001255-2001403)
[»] chr3 (2 HSPs)
chr3 (1-89)||(40138848-40138936)
chr3 (235-264)||(40138946-40138975)
[»] chr7 (2 HSPs)
chr7 (96-210)||(35253229-35253340)
chr7 (96-234)||(35249369-35249496)
[»] chr1 (1 HSPs)
chr1 (157-228)||(23919312-23919383)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 89 - 234
Target Start/End: Complemental strand, 27929370 - 27929225
Alignment:
Q  89 tgtaaagaaggtcgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgtttttgttcttattcatgtaagatcttatatatacaag 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27929370 tgtaaagaaggtcgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgtttttgttcttattcatgttagatcttatatatacaag 27929271  T
Q  189 aatacaagaatattacctaataatgactaacctataatatgattat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27929270 aatacaagaatattacctaataatgactaacctataatatgattat 27929225  T

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Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 89 - 234
Target Start/End: Original strand, 988317 - 988462
Alignment:
Q  89 tgtaaagaaggtcgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgtttttgttcttattcatgtaagatcttatatatacaag 188  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  988317 tgtaaagaaggacgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgtttttgttcttattcatgttagatcttatatatacaag 988416  T
Q  189 aatacaagaatattacctaataatgactaacctataatatgattat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  988417 aatacaagaatattacctaataatgactaacctataatatgattat 988462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 89 - 234
Target Start/End: Original strand, 983624 - 983768
Alignment:
Q  89 tgtaaagaaggtcgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgtttttgttcttattcatgtaagatcttatatatacaag 188  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||    
T  983624 tgtaaagaaggacgactagtatagtaaatatggcatgacagtattgatatcagaattgtgtatctt-gttcttattcatgtaagatcttatatatacaag 983722  T
Q  189 aatacaagaatattacctaataatgactaacctataatatgattat 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  983723 aatacaagaatattacctaataatgactaacctataatatgattat 983768  T

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Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 89 - 234
Target Start/End: Complemental strand, 1996706 - 1996558
Alignment:
Q  89 tgtaaagaaggtcgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgttttt---gttcttattcatgtaagatcttatatatac 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  1996706 tgtaaagaaggtcgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgttttttttgttcttattcatgtaagatcttatatatac 1996607  T
Q  186 aagaatacaagaatattacctaataatgactaacctataatatgattat 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1996606 aagaatacaagaatattacctaataatgactaacctataatatgattat 1996558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 89 - 234
Target Start/End: Complemental strand, 2001403 - 2001255
Alignment:
Q  89 tgtaaagaaggtcgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgttttt---gttcttattcatgtaagatcttatatatac 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  2001403 tgtaaagaaggtcgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgttttttttgttcttattcatgtaagatcttatatatac 2001304  T
Q  186 aagaatacaagaatattacctaataatgactaacctataatatgattat 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2001303 aagaatacaagaatattacctaataatgactaacctataatatgattat 2001255  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 40138848 - 40138936
Alignment:
Q  1 ccaattttagtagttcatggacttactgtaatatttatcatagatatattgaaattcaaaatataatttggtaggaggccatgatatct 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40138848 ccaattttagtagttcatggacttactgtaatatttatcatagatatattgaaattaaaaatataatttggtaggaggccatgatatct 40138936  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 40138946 - 40138975
Alignment:
Q  235 gcatacaagcagggttttaaataaggatca 264  Q
    ||||||||||||||||||||||||||||||    
T  40138946 gcatacaagcagggttttaaataaggatca 40138975  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 35253229 - 35253340
Alignment:
Q  96 aaggtcgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgtttttgttcttattcatgtaagatcttatatatacaagaatacaa 195  Q
    |||| |||||||||||| ||||| |||||  ||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||| |||||||    
T  35253229 aaggacgactagtataggaaataaggcataacagtattgatatcagaattgtgtgtt---gttcttattcatgtaaaatcttatatatacaaaaatacaa 35253325  T
Q  196 gaatattacctaata 210  Q
    |||||||||||||||    
T  35253326 gaatattacctaata 35253340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 35249369 - 35249496
Alignment:
Q  96 aaggtcgactagtatagtaaatatggcatggcagtattgatatcagaattgtgtgtttttgttcttattcatgtaagatcttatatatacaagaatacaa 195  Q
    |||| |||||||||||| ||||| ||||||  |||||||||||||||||||||||    ||||||||||||||||| |||||||||        ||||||    
T  35249369 aaggacgactagtataggaaataaggcatgatagtattgatatcagaattgtgtg---ctgttcttattcatgtaaaatcttatat--------atacaa 35249457  T
Q  196 gaatattacctaataatgactaacctataatatgattat 234  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  35249458 gaatattatctaataatggctaacctataatatgattat 35249496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 23919383 - 23919312
Alignment:
Q  157 ttcttattcatgtaagatcttatatatacaagaatacaagaatattacctaataatgactaacctataatat 228  Q
    ||||||||||||||| ||||||||||||||||||||||||||   ||| |||||||||||| ||||||||||    
T  23919383 ttcttattcatgtaatatcttatatatacaagaatacaagaaatctacgtaataatgactagcctataatat 23919312  T

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