View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_2 (Length: 494)
Name: NF5011_low_2
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 133 - 406
Target Start/End: Original strand, 6450541 - 6450814
Alignment:
| Q |
133 |
tggcgattgaaaaacacatgcgaatgtgatgaaaatcgatatacgacagaagatgaattgaggtgagagacacacaagacatggaatatttgaacacgga |
232 |
Q |
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| T |
6450541 |
tggcgattgaaaaacacgcgcgaatgtgatgaaaatcgatatacgacagaagatgaattgaggtgagagacacacaagacatggaatatttgaacacgga |
6450640 |
T |
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| Q |
233 |
gagggaatattggattgcaacattacataattagacaaatgctagggtttcaatttttaaatgttaacgttggaagcagacgattgtttggaatcatttc |
332 |
Q |
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| T |
6450641 |
gagggaatattggattgcaacattacataattagacaaatgctagggtttcaatttttaaatgttaacgttggaagcagacgattgtttggaatcatttc |
6450740 |
T |
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| Q |
333 |
taaaattcctacttgcacttccttccatgctttgtcttcactcttaagtattgcatgtacaactcttaatagaa |
406 |
Q |
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| T |
6450741 |
taaaattcctacttgcacttccttccatgctttgtcttgactcttaagtattgcatgtacaactcttaatagaa |
6450814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 6450469 - 6450542
Alignment:
| Q |
17 |
ataaagaacaaaagaagagaacaaaggaagagactatagcctagacaaggtcacgccgacgagtcacgtgagtg |
90 |
Q |
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| T |
6450469 |
ataaagaacaaaagaagagaacaaaggaagagactatagcctagacaaggtcacgccgacgagtcacgtgagtg |
6450542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 494
Target Start/End: Original strand, 6450841 - 6450893
Alignment:
| Q |
439 |
caattgtaattccgtattattcatagtgaatgaattgaggtaatttatagtattat |
494 |
Q |
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| T |
6450841 |
caattgtaattccgtattattgatagttaatgaattgagg---tttatagtattat |
6450893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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