View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_21 (Length: 274)
Name: NF5011_low_21
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 30618504 - 30618768
Alignment:
| Q |
1 |
taggtacaagagctatgtgcatgtgtgtataaacagtttagtgcacatgcatatatactattggattggatatcaaatatcataacttaagctttgattt |
100 |
Q |
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| T |
30618504 |
taggtacaagagctatgtgcatgtgtgtataaatagtttagtgcacatgcatatatactattggattggatatcaaatatcataacttaagctttgattt |
30618603 |
T |
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| Q |
101 |
agtagagtatttatctatgttaaaatgtgaggtaggtgagactataatatatgtctataaattaaataaatgaaattagtagcttactgaaagttcctag |
200 |
Q |
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| T |
30618604 |
agtagagtatttatctatgttaaaatatgaggtaggttagattataatatatgtctataaattaaataaatgaaattagtagcttactgaaagttcctag |
30618703 |
T |
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| Q |
201 |
gtagagatctttgttgcctgcaactcttccaatcctagcttgccatctaccatgttgatgatgtc |
265 |
Q |
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| T |
30618704 |
gtagagatctttgttgcctgcaactcttccaatcctagcttgccatctaccatgttgatgatgtc |
30618768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 47754017 - 47753935
Alignment:
| Q |
183 |
cttactgaaagttcctaggtagagatctttgttgcctgcaactcttccaatcctagcttgccatctaccatgttgatgatgtc |
265 |
Q |
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| T |
47754017 |
cttactgaatgttccaaggtaaaggtccttgttaccagcaactcttccaatcctagcttgccacctaccatgttggtgatgtc |
47753935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 263
Target Start/End: Original strand, 24562105 - 24562186
Alignment:
| Q |
182 |
gcttactgaaagttcctaggtagagatctttgttgcctgcaactcttccaatcctagcttgccatctaccatgttgatgatg |
263 |
Q |
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| T |
24562105 |
gcttactgaaagttcccaagtatagatctttatttcctgcaactctgccaatccttgcttgccatcttccatgttggtgatg |
24562186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 40190590 - 40190511
Alignment:
| Q |
186 |
actgaaagttcctaggtagagatctttgttgcctgcaactcttccaatcctagcttgccatctaccatgttgatgatgtc |
265 |
Q |
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| T |
40190590 |
actgaaagttccaagatatagatctttattaccagccactctaccaattctagcttgccatcttccatgttggtgatgtc |
40190511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 5177620 - 5177699
Alignment:
| Q |
186 |
actgaaagttcctaggtagagatctttgttgcctgcaactcttccaatcctagcttgccatctaccatgttgatgatgtc |
265 |
Q |
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|||||||||||| || ||||||||||| || || |||||||| || || | |||||||||||| |||||||||||||||| |
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| T |
5177620 |
actgaaagttccaagatagagatctttatttccagcaactctccctattcgagcttgccatcttccatgttgatgatgtc |
5177699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 41964214 - 41964287
Alignment:
| Q |
190 |
aaagttcctaggtagagatctttgttgcctgcaactcttccaatcctagcttgccatctaccatgttgatgatg |
263 |
Q |
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|||||||||| ||| ||||||||||| || || |||| ||||| || ||||||||||| |||||||| ||||| |
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| T |
41964214 |
aaagttcctaagtaaagatctttgtttcccgcgactcgaccaattcttgcttgccatcttccatgttggtgatg |
41964287 |
T |
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