View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5011_low_23 (Length: 260)

Name: NF5011_low_23
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5011_low_23
NF5011_low_23
[»] scaffold0025 (1 HSPs)
scaffold0025 (11-236)||(36835-37058)
[»] chr5 (3 HSPs)
chr5 (11-239)||(408165-408390)
chr5 (140-242)||(41485110-41485212)
chr5 (13-55)||(41485002-41485044)
[»] chr6 (5 HSPs)
chr6 (20-196)||(16358729-16358903)
chr6 (20-196)||(18849535-18849710)
chr6 (74-239)||(26141531-26141701)
chr6 (74-239)||(26045831-26046001)
chr6 (140-242)||(25509503-25509610)
[»] scaffold0215 (1 HSPs)
scaffold0215 (12-196)||(24728-24911)
[»] chr2 (4 HSPs)
chr2 (138-239)||(13693784-13693885)
chr2 (132-194)||(41454865-41454927)
chr2 (10-107)||(45225018-45225116)
chr2 (151-239)||(45224894-45224985)
[»] chr8 (3 HSPs)
chr8 (20-196)||(3372082-3372257)
chr8 (132-242)||(9035163-9035273)
chr8 (11-108)||(9035591-9035688)
[»] chr4 (5 HSPs)
chr4 (140-239)||(44037177-44037276)
chr4 (36-219)||(6019254-6019434)
chr4 (11-106)||(44203567-44203665)
chr4 (11-239)||(16422299-16422535)
chr4 (129-194)||(41389217-41389282)
[»] chr7 (3 HSPs)
chr7 (123-239)||(33164328-33164444)
chr7 (11-181)||(28195303-28195471)
chr7 (13-73)||(47293316-47293377)
[»] chr3 (5 HSPs)
chr3 (146-215)||(26641423-26641492)
chr3 (11-226)||(4477362-4477578)
chr3 (23-110)||(28145018-28145105)
chr3 (11-104)||(26641516-26641610)
chr3 (138-183)||(41378901-41378946)
[»] chr1 (2 HSPs)
chr1 (43-230)||(35812105-35812292)
chr1 (21-111)||(12698965-12699055)


Alignment Details
Target: scaffold0025 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 37058 - 36835
Alignment:
Q  11 agaatatggcaattttagaaaaag-taaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaattt 109  Q
    |||||| ||||||||||||||||  |||||||||| || ||||||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||     
T  37058 agaatacggcaattttagaaaaaaataaggtacggatacgtcaataaaatcataagttttgttatagaatataacatgaaagagttaaattcttcaattc 36959  T
Q  110 acaacnnnnnnnntcaccttaaaagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataacattatattatcata 209  Q
    |||||        |||| |||| |||| |||||||  |||||||||  || ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36958 acaacaaaataa-tcacattaatagtttaaaaagttgaaatttaga--tggttacaacaacaaagaaactcaaacgcacaaataacattatattatcata 36862  T
Q  210 ttaatgtataggagaaagccataaatt 236  Q
    ||||||||||||||||||||| |||||    
T  36861 ttaatgtataggagaaagccacaaatt 36835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 408390 - 408165
Alignment:
Q  11 agaatatggcaattttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaattta 110  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| |||  ||||||||||||||| |    
T  408390 agaatacggcaattttagaaaaagtaaggtacgggtacgtcaataaaatcataagttttgttatagaatataacatgaaagaattaaattcttcaattca 408291  T
Q  111 caacnnnnnnnntcaccttaaaagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataacattatattatcatat 210  Q
    ||||        |||| | | ||||| |||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||| | |||||| |  |||    
T  408290 caac-aaaaaaatcacatcagaagtttaaaaagtccaaatttagagtcggttacaacaacaaagaaactcaaacgcacaaataatagtatattgt--tat 408194  T
Q  211 taatgtataggagaaagccataaatttca 239  Q
    ||||||||| |||||||||| ||||||||    
T  408193 taatgtataagagaaagccacaaatttca 408165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 41485110 - 41485212
Alignment:
Q  140 aaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataacattatattatcatattaatgtataggagaaagccataaatttca 239  Q
    |||||||||||||| ||||| |||||| ||||||||||||||| || |||||||| |||| ||| |||||||||| || ||||||  |||||| ||||||    
T  41485110 aaagtcaaaatttaaagttggttacaataacaaagaaactcaagcgcacaaataatattaaattgtcatattaatataaaggagagtgccatagatttca 41485209  T
Q  240 ttc 242  Q
    |||    
T  41485210 ttc 41485212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 41485002 - 41485044
Alignment:
Q  13 aatatggcaattttagaaaaagtaaggtacgggtatgtcaata 55  Q
    |||| |||||||||| ||||||||||||||||||| |||||||    
T  41485002 aatacggcaattttaaaaaaagtaaggtacgggtacgtcaata 41485044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 16358729 - 16358903
Alignment:
Q  20 caattttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaatttacaacnnnnn 119  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| | | |||||||||||||||| | ||          
T  16358729 caattttagaaaaagtaaggtacgggtacgtcaataaaatcataagttttgttatagaatataacatgaaggagttaaattcttcaattcataa--aaga 16358826  T
Q  120 nnntcaccttaaaagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataaca 196  Q
       |||| ||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  16358827 aaatcacattagaagtttaaaaagtcgaaatttagagttggttacaacaacaaagaaactcaaacgcacaaataaca 16358903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 18849710 - 18849535
Alignment:
Q  20 caattttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaatttacaacnnnnn 119  Q
    |||||||||||||||||||| ||| ||| ||||||| ||||||||||||||| ||||| ||||||||| | | |||||||||||||||| | |||         
T  18849710 caattttagaaaaagtaagggacgagtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataac-aaga 18849612  T
Q  120 nnntcaccttaaaagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataaca 196  Q
       |||| ||| ||||| ||||| || ||||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  18849611 aaatcacattagaagtttaaaaattcgaaatttagagttggttacaacaacaaagaaactcaaatgcacaaataaca 18849535  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 26141531 - 26141701
Alignment:
Q  74 tagactataacatggaagggttaaattcttcaatttacaacnnnnnnnntcaccttaaaagttgaaaaagtcaaaatttagagttg-----attacaaca 168  Q
    |||| ||||||||||||| |||||||||||||||||| ||         | || ||| ||||| ||||||||||||||||||||||     |||| | ||    
T  26141531 tagaatataacatggaagagttaaattcttcaatttataaaaaataaaatgacattagaagtttaaaaagtcaaaatttagagttggttatattaaagca 26141630  T
Q  169 acaaagaaactcaaacggacaaataacattatattatcatattaatgtataggagaaagccataaatttca 239  Q
    ||||||||||||||| | |||||||| |||||| | ||||||||||||| | |||||| ||||||||||||    
T  26141631 acaaagaaactcaaatgcacaaataatattatagtgtcatattaatgtacaagagaaatccataaatttca 26141701  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 26045831 - 26046001
Alignment:
Q  74 tagactataacatggaagggttaaattcttcaatttacaacnnnnnnnntcaccttaaaagttgaaaaagtcaaaatttagagttg-----attacaaca 168  Q
    |||| ||||||||||||| |||||||||||||||||| ||         | || ||| ||||| ||||||||||||||||||||||     |||| | ||    
T  26045831 tagaatataacatggaagagttaaattcttcaatttataaaaaataaaatgacattagaagtttaaaaagtcaaaatttagagttggttatattaaagca 26045930  T
Q  169 acaaagaaactcaaacggacaaataacattatattatcatattaatgtataggagaaagccataaatttca 239  Q
    ||||||||| ||||| | |||||||| |||||| | ||||||||||||| | |||||| ||||||||||||    
T  26045931 acaaagaaattcaaatgcacaaataatattatagtgtcatattaatgtacaagagaaatccataaatttca 26046001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 25509503 - 25509610
Alignment:
Q  140 aaagtcaaaatttagagttgatta-----caacaacaaagaaactcaaacggacaaataacattatattatcatattaatgtataggagaaagccataaa 234  Q
    |||||||||||||||||||| |||     || ||||||||||||||||| | |||||||| |||| | | |||||||| |||| | |||||| |||||||    
T  25509503 aaagtcaaaatttagagttggttatatcacagcaacaaagaaactcaaatgcacaaataatattacagtgtcatattagtgtacaagagaaatccataaa 25509602  T
Q  235 tttcattc 242  Q
    ||||||||    
T  25509603 tttcattc 25509610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 24728 - 24911
Alignment:
Q  12 gaatatggcaattttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaatttac 111  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||| ||||||||| | | |||||||||||||||| |     
T  24728 gaatatgacaattttagaaaaagtaagggacgggtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcat 24827  T
Q  112 aacnnnnnnnntcaccttaaaagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataaca 196  Q
    |||        |||| ||| ||||| ||||| || ||||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  24828 aac-aagaaaatcacattagaagtttaaaaattcgaaatttagagttggttacaacaacaaagaaactcacacgcacaaataaca 24911  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 13693784 - 13693885
Alignment:
Q  138 aaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataacattatattatcatattaatgtataggagaaagccataaattt 237  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||||||||||| || ||||||||||||||||||||||||||||||    
T  13693784 aaaaagtcaaaatttagagttggttacaacaacaaagaaacgcaaacgcgcaaataacattatattgtcctattaatgtataggagaaagccataaattt 13693883  T
Q  238 ca 239  Q
    ||    
T  13693884 ca 13693885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 41454927 - 41454865
Alignment:
Q  132 aagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataa 194  Q
    ||||| |||||||| ||||||||||||| |||||| |||||||||||||||| | ||||||||    
T  41454927 aagtttaaaaagtcgaaatttagagttggttacaataacaaagaaactcaaaggcacaaataa 41454865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 45225116 - 45225018
Alignment:
Q  10 aagaatatggcaattttagaaaaagtaaggtacgggtatgtcaatagaatcataag-ttttgttatagactataacatggaagggttaaattcttcaat 107  Q
    ||||||| | |||||||  ||||||||||||| ||||| ||||||| ||||||||| |||||||||| | ||||||||| ||| | ||| |||||||||    
T  45225116 aagaatacgccaattttttaaaaagtaaggtaggggtaagtcaataaaatcataagtttttgttatataatataacatgaaagagataagttcttcaat 45225018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 45224985 - 45224894
Alignment:
Q  151 ttagagttgattacaacaacaaagaaactcaaacggacaaataacattatattatcat---attaatgtataggagaaagccataaatttca 239  Q
    ||||||||| ||||| | |||||||||||||||   ||||| || | |||||||||||   |||||| |||| |||||||||| ||||||||    
T  45224985 ttagagttggttacagctacaaagaaactcaaattcacaaacaatactatattatcatattattaatatataagagaaagccacaaatttca 45224894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 3372082 - 3372257
Alignment:
Q  20 caattttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaatttacaacnnnnn 119  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||| ||||||||| | | |||||||||||||||| | |||         
T  3372082 caattttagaaaaagtaagggacgggtacgtcaataaaatcataagttttgtcatagaatataacatgaaggagttaaattcttcaattcataac-aaga 3372180  T
Q  120 nnntcaccttaaaagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataaca 196  Q
       |||| ||| ||||| ||||| || ||||||||||||| ||||||||| ||||||||||||| | ||||||||||    
T  3372181 aaatcacattagaagtttaaaaattcgaaatttagagttggttacaacaataaagaaactcaaatgcacaaataaca 3372257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 9035273 - 9035163
Alignment:
Q  132 aagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataacattatattatcatattaatgtataggagaaagccat 231  Q
    ||||| || ||||| ||||||||||||| |||||||||||||||||| |||||  ||||||||||||||||| |||||||||||| || |||||| |||     
T  9035273 aagtttaagaagtcgaaatttagagttggttacaacaacaaagaaacgcaaacatacaaataacattatattgtcatattaatgtgtatgagaaaaccac 9035174  T
Q  232 aaatttcattc 242  Q
    |||||||||||    
T  9035173 aaatttcattc 9035163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 9035688 - 9035591
Alignment:
Q  11 agaatatggcaattttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaatt 108  Q
    |||||| | |||||| | ||||||||||||| ||||| ||||||| |||||||| ||||||| ||||  |||||||| ||| ||||||||||||||||    
T  9035688 agaatacgtcaatttaaaaaaaagtaaggtatgggtacgtcaataaaatcataaattttgttttagaaaataacatgaaagagttaaattcttcaatt 9035591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 44037276 - 44037177
Alignment:
Q  140 aaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataacattatattatcatattaatgtataggagaaagccataaatttca 239  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||  |||| ||| ||| |||| ||||||| ||||||| |||||||||| ||||||||    
T  44037276 aaagtcgaaatttagagttggttacaacaacaaagaaactcaaacacacaagtaatattgtattgtcatattgatgtataagagaaagccaaaaatttca 44037177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 6019254 - 6019434
Alignment:
Q  36 aaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaatttacaacnnnnnnnntcaccttaaaagt 135  Q
    |||||||  ||| ||||||| |||||||| ||||||||| || || |||||| |||  ||||||||||||||| |||||        |||| | | || |    
T  6019254 aaggtacaagtacgtcaataaaatcataaattttgttatggaatacaacatgaaagatttaaattcttcaattcacaacaaaaata-tcacatcagaaat 6019352  T
Q  136 tgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataacattatattatcatattaatgtata 219  Q
    | |||||||| ||||||||||||| ||||||||||  ||||||||||||| | |||||| | |||||| | |||||||||||||    
T  6019353 ttaaaaagtcgaaatttagagttggttacaacaac--agaaactcaaacgcataaataatagtatattgttatattaatgtata 6019434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 44203567 - 44203665
Alignment:
Q  11 agaatatggcaattttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatag---actataacatggaagggttaaattcttcaa 106  Q
    |||||| | |||||||  |||||||||||||||| || ||||||| |||||||||||||||||||    | ||||||||||||| | ||||||||||||    
T  44203567 agaatacgacaatttttaaaaaagtaaggtacggatacgtcaataaaatcataagttttgttatactataatataacatggaagagataaattcttcaa 44203665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 16422299 - 16422535
Alignment:
Q  11 agaatatggcaattttagaaaaagtaa----ggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaa 106  Q
    |||||| | ||||||||||||||||||    ||||  |||| || | || ||||| ||||||||||||||| ||||||||| ||| |||||||||||| |    
T  16422299 agaatacgacaattttagaaaaagtaattaaggtatcggtacgttagtaaaatcagaagttttgttatagaatataacatgaaagagttaaattcttcga 16422398  T
Q  107 tttacaacnnnnnnnntcaccttaaaagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataacattatatta-- 204  Q
    ||  || |        ||||  || ||||| |||||||||||||||||||||| |||||  |||||| ||||| |||   |||||||| |||||||||      
T  16422399 ttcgcagcaaaaaaa-tcacaatagaagtttaaaaagtcaaaatttagagttggttacagtaacaaataaacttaaatacacaaataatattatattata 16422497  T
Q  205 ---tcatattaatgtataggagaaagccataaatttca 239  Q
       |||||||| |||||| ||||| | |||||||||||    
T  16422498 ttgtcatattagtgtataagagaatgtcataaatttca 16422535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 41389217 - 41389282
Alignment:
Q  129 taaaagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataa 194  Q
    ||||| || |||||||| ||| | ||||||| ||| ||||||||||||||||||||| | ||||||    
T  41389217 taaaaatttaaaaagtcgaaactaagagttggttataacaacaaagaaactcaaacgcataaataa 41389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 33164328 - 33164444
Alignment:
Q  123 tcaccttaaaagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaacggacaaataacattatattatcatattaatgtatagga 222  Q
    |||| ||| ||||| |||||||| ||||||||||||| |||||||||||| |||||||||||  |||| ||| ||| | || ||||||| ||||||| ||    
T  33164328 tcacattagaagtttaaaaagtcgaaatttagagttggttacaacaacaacgaaactcaaacacacaagtaatattgttttgtcatattgatgtataaga 33164427  T
Q  223 gaaagccataaatttca 239  Q
    |||||||| ||||||||    
T  33164428 gaaagccaaaaatttca 33164444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 28195471 - 28195303
Alignment:
Q  11 agaatatggcaattttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaattta 110  Q
    |||||| || ||||||| ||||| |||||||| |||  ||||| | |||||| |||||||||||| | |||||||||  ||   |||||||||||| ||     
T  28195471 agaatacggtaattttaaaaaaattaaggtacaggtgcgtcaagaaaatcatgagttttgttatataatataacatg--agacctaaattcttcaacttt 28195374  T
Q  111 caacnnnnnnnntcaccttaaaagttgaaaaagtcaaaatttagagttgattacaacaacaaagaaactca 181  Q
    ||||        ||||  || ||||| |||||||| ||| ||||||||| ||||||||||||| |||||||    
T  28195373 caacaaaaaacatcacaatagaagtttaaaaagtcgaaaattagagttggttacaacaacaaaaaaactca 28195303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 47293316 - 47293377
Alignment:
Q  13 aatatggcaatttt-agaaaaagtaaggtacgggtatgtcaatagaatcataagttttgtta 73  Q
    |||||||||||||| |||||||||||||||   ||| ||||||| || ||||||||||||||    
T  47293316 aatatggcaatttttagaaaaagtaaggtatatgtacgtcaataaaaccataagttttgtta 47293377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 26641492 - 26641423
Alignment:
Q  146 aaaatttagagttgattacaacaacaaagaaactcaaacggacaaataacattatattatcatattaatg 215  Q
    |||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||  ||||||||||    
T  26641492 aaaatttagagttggttacaacaacaaaaaaactcaaacgcacaaataacattatattgccatattaatg 26641423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 4477362 - 4477578
Alignment:
Q  11 agaatatggcaattttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaattta 110  Q
    |||||| | |||||||| ||||||||||||||  ||| ||||||| ||| ||||||||||||||||| ||||||||| ||  |||||||||||| ||| |    
T  4477362 agaatacgacaattttaaaaaaagtaaggtacatgtacgtcaataaaattataagttttgttatagaatataacatgaaaaagttaaattcttcgattca 4477461  T
Q  111 caacnnnnnnnntcaccttaaaagttgaaaaagtcaaaatttagagttg---attacaacaacaaagaaactcaaacggacaaataacattatattatca 207  Q
    |||         |||| ||| ||||| |||||||  |||  ||||||||   |  ||||||||||| ||||||||||  |||||||| |||||||| | |    
T  4477462 caa--taaaaaatcacattagaagtttaaaaagttgaaacatagagttggctaaaacaacaacaaaaaaactcaaacatacaaataatattatattgtta 4477559  T
Q  208 tattaatgtataggagaaa 226  Q
    |||| ||||||| ||||||    
T  4477560 tattgatgtataagagaaa 4477578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 28145105 - 28145018
Alignment:
Q  23 ttttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaattta 110  Q
    ||||| ||||| ||| | ||||||| ||||||| |||||| ||||||| |||| | |||||||||  |||| ||||||||||||||||    
T  28145105 ttttaaaaaaactaaagaacgggtacgtcaataaaatcatgagttttgctatataatataacatgagagggctaaattcttcaattta 28145018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 26641610 - 26641516
Alignment:
Q  11 agaatatggcaattttagaaaaa-gtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttc 104  Q
    |||||||  |||||||||||||| |||||||| |||||  | |||| ||||||||||||||||| ||| ||||| | | ||  ||||||||||||    
T  26641610 agaatataacaattttagaaaaaagtaaggtatgggtacattaataaaatcataagttttgttacagaatataatacgaaatagttaaattcttc 26641516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 41378901 - 41378946
Alignment:
Q  138 aaaaagtcaaaatttagagttgattacaacaacaaagaaactcaaa 183  Q
    ||||||| ||||  ||| ||||||||||||||||||||||||||||    
T  41378901 aaaaagtaaaaaagtagggttgattacaacaacaaagaaactcaaa 41378946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 35812105 - 35812292
Alignment:
Q  43 gggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaatttacaacnnnnnnnntcaccttaaaagttgaaaaa 142  Q
    ||||| ||||||| |||||| |||||||||||| | |||||||||  || | | ||||||||||||||||||        | ||  |||||||| |||||    
T  35812105 gggtacgtcaataaaatcatgagttttgttatataatataacatgagagagctgaattcttcaatttacaacaaaaatatt-acgataaaagtttaaaaa 35812203  T
Q  143 gtcaaaatttagagttgattacaacaacaaa-gaaactcaaacggacaaataacattatattatcatattaatgtataggagaaagcca 230  Q
    ||| |||  |||||||| |||||||||||||  ||||||||| | ||| | |||| |||||| |||||||||| |||| |||| |||||    
T  35812204 gtcgaaaactagagttggttacaacaacaaataaaactcaaatgcacatacaacactatattgtcatattaatctataagagagagcca 35812292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 12699055 - 12698965
Alignment:
Q  21 aattttagaaaaagtaaggtacgggtatgtcaatagaatcataagttttgttatagactataacatggaagggttaaattcttcaatttac 111  Q
    ||||||| ||||| |||||| ||  ||| |||||| ||||| ||||||||||||| | |||||||||  || | ||| |||||||||||||    
T  12699055 aattttaaaaaaactaaggtccgaatatatcaataaaatcaaaagttttgttatataatataacatgagagagctaagttcttcaatttac 12698965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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