View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5011_low_25 (Length: 252)

Name: NF5011_low_25
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5011_low_25
NF5011_low_25
[»] chr1 (6 HSPs)
chr1 (24-175)||(25491809-25491960)
chr1 (24-175)||(48990715-48990866)
chr1 (14-102)||(19874332-19874420)
chr1 (99-175)||(19880618-19880694)
chr1 (207-236)||(48990897-48990926)
chr1 (207-235)||(48986073-48986101)
[»] chr7 (3 HSPs)
chr7 (24-168)||(46169131-46169275)
chr7 (207-236)||(46164487-46164516)
chr7 (207-235)||(46169311-46169339)
[»] chr3 (1 HSPs)
chr3 (64-124)||(12772654-12772714)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 25491809 - 25491960
Alignment:
Q  24 gatgatgtgtttaatagacgatggttcttgaaggcatggcggcgagggcgacggcagaagggaggcatggcggtgagggagattgaagaagatgaactgt 123  Q
    ||||||||||||||||||||  ||||| |  ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25491809 gatgatgtgtttaatagacggcggttcctagaggcatgacggcgagggcgacggcataagggaggcatggcggtgagggagattgaagaagatgaactgt 25491908  T
Q  124 gtgatacgagagaagagaagcgcgtgtttgcagagaagagaagcgcgagttt 175  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  25491909 gtgatacgagagaagagaagcgcgtgtttgtagagaagagaagcgcgtgttt 25491960  T

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Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 48990715 - 48990866
Alignment:
Q  24 gatgatgtgtttaatagacgatggttcttgaaggcatggcggcgagggcgacggcagaagggaggcatggcggtgagggagattgaagaagatgaactgt 123  Q
    ||||||||||||||||||||  ||||| |  ||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||    
T  48990715 gatgatgtgtttaatagacggcggttcctagaggcatgacggcgagggcgacaacataagggaggcatggcggtgagggagattgaagaagatgaactgt 48990814  T
Q  124 gtgatacgagagaagagaagcgcgtgtttgcagagaagagaagcgcgagttt 175  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  48990815 gtgatacgagagaagagaaacgcgtgtttgcagagaagagaagcgcgtgttt 48990866  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 19874332 - 19874420
Alignment:
Q  14 gaagaggggggatgatgtgtttaatagacgatggttcttgaaggcatggcggcgagggcgacggcagaagggaggcatggcggtgaggg 102  Q
    ||||||||| ||||||||||||||||||||  ||||| || ||||||||||||||||||||||||| | ||||||||||||||| ||||    
T  19874332 gaagaggggagatgatgtgtttaatagacggcggttcctggaggcatggcggcgagggcgacggcatatgggaggcatggcggtaaggg 19874420  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 19880618 - 19880694
Alignment:
Q  99 agggagattgaagaagatgaactgtgtgatacgagagaagagaagcgcgtgtttgcagagaagagaagcgcgagttt 175  Q
    |||| |||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| ||||    
T  19880618 agggggattgaagaagatgaattgtgtgatacgagagaagagaaacccgtgtttgcagagaagagaagcgcgtgttt 19880694  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 48990897 - 48990926
Alignment:
Q  207 ctgatgtttttgtttatttttaatctgaac 236  Q
    ||||||||||||||||||||||||||||||    
T  48990897 ctgatgtttttgtttatttttaatctgaac 48990926  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 48986101 - 48986073
Alignment:
Q  207 ctgatgtttttgtttatttttaatctgaa 235  Q
    |||||||||||||||||||||||||||||    
T  48986101 ctgatgtttttgtttatttttaatctgaa 48986073  T

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Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 46169131 - 46169275
Alignment:
Q  24 gatgatgtgtttaatagacgatggttcttgaaggcatggcggcgagggcgacggcagaagggaggcatggcggtgagggagattgaagaagatgaactgt 123  Q
    ||||||||||||||||||||  ||||| |  ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  46169131 gatgatgtgtttaatagacggcggttcctagaggcatgacggcgagggcgacggcataagggaggcatggcggtgagggaggttgaagaagatgaactgt 46169230  T
Q  124 gtgatacgagagaagagaagcgcgtgtttgcagagaagagaagcg 168  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  46169231 gtgatacgagagaagagaagcgcgtgtttgtagagaagagaagcg 46169275  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 46164516 - 46164487
Alignment:
Q  207 ctgatgtttttgtttatttttaatctgaac 236  Q
    ||||||||||||||||||||||||||||||    
T  46164516 ctgatgtttttgtttatttttaatctgaac 46164487  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 46169311 - 46169339
Alignment:
Q  207 ctgatgtttttgtttatttttaatctgaa 235  Q
    |||||||||||||||||||||||||||||    
T  46169311 ctgatgtttttgtttatttttaatctgaa 46169339  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 12772714 - 12772654
Alignment:
Q  64 ggcgagggcgacggcagaagggaggcatggcggtgagggagattgaagaagatgaactgtg 124  Q
    ||||| || |||||| | ||||||||||| | ||||||| |||||| ||||||||||||||    
T  12772714 ggcgaaggggacggcgggagggaggcatgactgtgagggggattgaggaagatgaactgtg 12772654  T

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