View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_27 (Length: 241)
Name: NF5011_low_27
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3682835 - 3682612
Alignment:
| Q |
1 |
tgttggactgcatcatattcttctatggnnnnnnntgtaagacaaaagagaaaatagaccaaatccagtgcaaaagattataattaacaaccaaatacta |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3682835 |
tgttggactgcatcatattcttctatggaaaaacatgtaagacaaaagagaaaatagaccaaatccagtgcaaaagattataattaacaaccaaatacta |
3682736 |
T |
|
| Q |
101 |
cacatgcgtttagaaaacccaacgacaaaacatcaatttaagctccacactcacattaaaagtaaacttttcaacaaagataaaacactctttaatttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3682735 |
cacatgcgtttagaaaacccaacgacaaaacatcaatttaagctccacactcacataaaaagtatacttttcaacaaagataaaacactctttaatttat |
3682636 |
T |
|
| Q |
201 |
gacaagcaaagctctaaaaagatt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
3682635 |
gacaagcaaagctctaaaaagatt |
3682612 |
T |
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