View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_28 (Length: 241)
Name: NF5011_low_28
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 39593811 - 39594025
Alignment:
| Q |
20 |
caattctcactagtctttctaacaaatattttctttcttgtaatccaattttgtgaacatcaatttcattagcctctccttcagagttaatcaataaacc |
119 |
Q |
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| T |
39593811 |
caattctcactagtctttctaacaaatattttctttcttgtaatccaattttgtgaacatcaatttcattagcctctccttcagagttaatcaataaacc |
39593910 |
T |
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| Q |
120 |
tcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattttaaagcctc---ttcatcataactctccattttttatgcctccaaaacactc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39593911 |
tcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattttaaagcctctaattcatcataactctccattttttatgcctccaaaacactc |
39594010 |
T |
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| Q |
217 |
aatgttgttcctatg |
231 |
Q |
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||||||||||||||| |
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| T |
39594011 |
aatgttgttcctatg |
39594025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 39626261 - 39626386
Alignment:
| Q |
42 |
caaatattttctttcttgtaatccaattttgtgaacatcaatttcattagcctctccttcagagttaatcaataaacctcttctcaaacgtgtaacagtt |
141 |
Q |
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||||||| |||||||||| || ||||||||||| |||||||||||||| | |||||||||| | ||||||||||||| |||||||||| ||| ||| |
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| T |
39626261 |
caaatatgttctttcttgcaacccaattttgtgtacatcaatttcattggagtctccttcaggagtggtcaataaacctctcctcaaacgtgcaactgtt |
39626360 |
T |
|
| Q |
142 |
ggaagtctctgaattgcagcccattt |
167 |
Q |
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||||| |||||||||| | ||||||| |
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| T |
39626361 |
ggaagcctctgaattgaatcccattt |
39626386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 39585434 - 39585542
Alignment:
| Q |
76 |
acatcaatttcattagcctctccttcagagttaatcaataaacctcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattttaaagcct |
175 |
Q |
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|||||||||||| | ||| ||||| |||| || |||| |||||||| ||||| |||| |||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
39585434 |
acatcaatttcacaaacctgtcctttagaggtagtcaacaaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcct |
39585533 |
T |
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| Q |
176 |
cttcatcat |
184 |
Q |
| |
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||||||||| |
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| T |
39585534 |
cttcatcat |
39585542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 39579104 - 39579210
Alignment:
| Q |
76 |
acatcaatttcattagcctctccttcagagttaatcaataaacctcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattttaaagcct |
175 |
Q |
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|||||||||||| | ||| ||||| |||| || |||| |||||||| ||||| |||| |||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
39579104 |
acatcaatttcacaaacctgtcctttagaggtagtcaacaaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcct |
39579203 |
T |
|
| Q |
176 |
cttcatc |
182 |
Q |
| |
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||||||| |
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|
| T |
39579204 |
cttcatc |
39579210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 39344226 - 39344157
Alignment:
| Q |
115 |
aaacctcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattttaaagcctcttcatcat |
184 |
Q |
| |
|
|||||| | ||||||||| || ||| |||||| ||||||||||||||||||| | ||| |||||||||| |
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| T |
39344226 |
aaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcat |
39344157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 39552745 - 39552814
Alignment:
| Q |
115 |
aaacctcttctcaaacgtgtaacagttggaagtctctgaattgcagcccattttaaagcctcttcatcat |
184 |
Q |
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|||||| | ||||||||| || ||| |||||| ||||||||||||||||||| | ||| |||||||||| |
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| T |
39552745 |
aaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcat |
39552814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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