View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_29 (Length: 239)
Name: NF5011_low_29
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8441074 - 8440974
Alignment:
| Q |
1 |
ttgcccctacttaggttacaagcttatgttacaaagctcgacaattgttaaactgtgtcaatctactataaatcatataatcttctataaatttttcgat |
100 |
Q |
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| T |
8441074 |
ttgcccctacttaggttacaagcttacgttacaaagctcgacaattgttaaactgtgtcaatctactataaatcatataatcttctataaatttttcgat |
8440975 |
T |
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| Q |
101 |
g |
101 |
Q |
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| T |
8440974 |
g |
8440974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8442972 - 8442872
Alignment:
| Q |
1 |
ttgcccctacttaggttacaagcttatgttacaaagctcgacaattgttaaactgtgtcaatctactataaatcatataatcttctataaatttttcgat |
100 |
Q |
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|||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8442972 |
ttgcccttacttaggttacaagcttgcgttacaaagctcggcaattgttaaactgtgtcaatctattataaatcatataatcttctataaatttttcgat |
8442873 |
T |
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| Q |
101 |
g |
101 |
Q |
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| T |
8442872 |
g |
8442872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 8440831 - 8440751
Alignment:
| Q |
100 |
tggttcacatcctcgttgaagcgttagagtgtcttcgaaagagagagaaatttagagattcaagaagaagaacgataaaac |
180 |
Q |
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| T |
8440831 |
tggttcacatcctcgttgaagcgttagagcgtcttcgaaagagagagaaattgagagattcaagaagaagaacgataaaac |
8440751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 8442727 - 8442640
Alignment:
| Q |
100 |
tggttcacatcctcgttgaagcgttagagtgtcttcgaaagagagagaaatttagagattcaagaagaagaacgataaaacgcaagag |
187 |
Q |
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|||||||||||||| ||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
8442727 |
tggttcacatcctctttgaagcgttagaacgtcttcaaaagagagagaaattgagagattcaagaagaagaacgataaaacacaagag |
8442640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 43061797 - 43061708
Alignment:
| Q |
2 |
tgcccctacttaggttacaagcttatgttacaaagctcgacaattgttaaactgtgtcaatctactataaatcatataatcttctataaa |
91 |
Q |
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||||||||||||||||| ||| || |||||| || |||||||||| ||| | | |||||||||| ||||||| |||||| ||| ||||| |
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| T |
43061797 |
tgcccctacttaggttataagtttgtgttaccaaactcgacaattcttataatttgtcaatctattataaatattataattttccataaa |
43061708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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