View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5011_low_3 (Length: 453)

Name: NF5011_low_3
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5011_low_3
NF5011_low_3
[»] chr6 (20 HSPs)
chr6 (6-429)||(4329371-4329794)
chr6 (54-109)||(15517160-15517215)
chr6 (53-103)||(34792477-34792527)
chr6 (54-115)||(18886317-18886378)
chr6 (54-115)||(34379805-34379866)
chr6 (54-117)||(11745930-11745994)
chr6 (54-116)||(13281604-13281666)
chr6 (58-128)||(32254895-32254965)
chr6 (55-128)||(8449570-8449643)
chr6 (55-128)||(8458374-8458447)
chr6 (54-119)||(11174054-11174119)
chr6 (54-115)||(26527260-26527321)
chr6 (54-115)||(32254830-32254891)
chr6 (61-109)||(29419864-29419912)
chr6 (55-103)||(34170099-34170147)
chr6 (54-117)||(31158850-31158913)
chr6 (79-137)||(14031764-14031822)
chr6 (54-99)||(2827629-2827674)
chr6 (54-103)||(3199739-3199788)
chr6 (54-103)||(20704044-20704093)
[»] scaffold0149 (1 HSPs)
scaffold0149 (54-139)||(24676-24761)
[»] chr5 (19 HSPs)
chr5 (55-140)||(33075136-33075221)
chr5 (57-128)||(29177709-29177780)
chr5 (54-115)||(10437707-10437768)
chr5 (58-98)||(31691285-31691325)
chr5 (52-103)||(18652833-18652884)
chr5 (54-109)||(28518792-28518847)
chr5 (54-101)||(35032293-35032340)
chr5 (54-128)||(13710360-13710434)
chr5 (54-104)||(16602257-16602307)
chr5 (58-128)||(17625714-17625784)
chr5 (60-117)||(37067619-37067676)
chr5 (56-104)||(15062305-15062353)
chr5 (54-93)||(1100088-1100127)
chr5 (54-109)||(11795806-11795861)
chr5 (55-109)||(41005683-41005737)
chr5 (54-115)||(3100414-3100475)
chr5 (79-128)||(43117382-43117431)
chr5 (54-94)||(22650886-22650926)
chr5 (55-95)||(42958629-42958669)
[»] chr2 (23 HSPs)
chr2 (54-122)||(11093532-11093600)
chr2 (54-128)||(1961379-1961453)
chr2 (54-109)||(15916748-15916803)
chr2 (58-128)||(41056884-41056954)
chr2 (54-115)||(3121431-3121492)
chr2 (54-115)||(15119786-15119847)
chr2 (54-115)||(31024180-31024241)
chr2 (57-109)||(21183400-21183452)
chr2 (57-109)||(38181775-38181827)
chr2 (63-128)||(13333443-13333508)
chr2 (54-115)||(33129083-33129144)
chr2 (54-115)||(38465798-38465859)
chr2 (54-109)||(26003450-26003505)
chr2 (54-93)||(38618426-38618465)
chr2 (55-117)||(2544422-2544484)
chr2 (54-115)||(3098196-3098257)
chr2 (62-115)||(4563942-4563995)
chr2 (54-115)||(7079379-7079440)
chr2 (62-115)||(11726573-11726626)
chr2 (54-115)||(25270926-25270987)
chr2 (54-115)||(41056958-41057019)
chr2 (54-103)||(45473098-45473147)
chr2 (57-109)||(23378015-23378067)
[»] chr1 (22 HSPs)
chr1 (54-140)||(48083488-48083574)
chr1 (54-115)||(34953905-34953966)
chr1 (54-115)||(50550189-50550250)
chr1 (54-109)||(33765857-33765912)
chr1 (54-109)||(41007692-41007747)
chr1 (58-117)||(41007751-41007810)
chr1 (54-128)||(14967221-14967295)
chr1 (62-128)||(14967303-14967369)
chr1 (54-103)||(14885340-14885389)
chr1 (54-103)||(14885498-14885547)
chr1 (54-103)||(20621251-20621300)
chr1 (54-115)||(24981911-24981972)
chr1 (54-103)||(35544554-35544603)
chr1 (54-103)||(39362879-39362928)
chr1 (54-115)||(46906870-46906931)
chr1 (55-115)||(2122640-2122700)
chr1 (54-122)||(3549849-3549917)
chr1 (72-128)||(46412699-46412755)
chr1 (54-125)||(50308627-50308698)
chr1 (54-115)||(14891747-14891808)
chr1 (54-103)||(47969555-47969604)
chr1 (55-103)||(29663737-29663784)
[»] chr7 (15 HSPs)
chr7 (54-115)||(31115679-31115740)
chr7 (57-115)||(2943221-2943279)
chr7 (57-115)||(25245216-25245274)
chr7 (54-102)||(3882881-3882929)
chr7 (56-115)||(10095728-10095787)
chr7 (54-103)||(21586835-21586884)
chr7 (54-130)||(21096181-21096257)
chr7 (54-93)||(3882621-3882660)
chr7 (54-117)||(4089136-4089199)
chr7 (54-93)||(26385656-26385695)
chr7 (54-109)||(30138803-30138858)
chr7 (54-109)||(41872121-41872176)
chr7 (65-115)||(23818433-23818483)
chr7 (54-115)||(7701197-7701258)
chr7 (54-102)||(39136636-39136684)
[»] chr4 (23 HSPs)
chr4 (54-115)||(52914068-52914129)
chr4 (54-115)||(55936057-55936118)
chr4 (54-128)||(4406237-4406311)
chr4 (54-123)||(32599550-32599619)
chr4 (59-115)||(12672520-12672576)
chr4 (54-109)||(2582823-2582878)
chr4 (54-105)||(10572740-10572791)
chr4 (54-140)||(40952331-40952418)
chr4 (54-115)||(16170980-16171041)
chr4 (54-115)||(24798197-24798258)
chr4 (54-115)||(36786220-36786281)
chr4 (54-115)||(48402481-48402542)
chr4 (54-93)||(33694039-33694078)
chr4 (54-109)||(46803478-46803533)
chr4 (59-128)||(19934713-19934782)
chr4 (54-103)||(39235158-39235207)
chr4 (54-115)||(56364396-56364457)
chr4 (55-103)||(2253975-2254023)
chr4 (67-115)||(2582891-2582939)
chr4 (62-122)||(18488598-18488658)
chr4 (54-94)||(26920702-26920742)
chr4 (59-115)||(54164888-54164944)
chr4 (54-109)||(55416368-55416424)
[»] chr3 (23 HSPs)
chr3 (54-115)||(37897752-37897813)
chr3 (56-115)||(22496960-22497019)
chr3 (54-115)||(24722696-24722757)
chr3 (56-109)||(35511843-35511896)
chr3 (54-115)||(45736696-45736757)
chr3 (54-115)||(52215950-52216011)
chr3 (54-115)||(54595799-54595860)
chr3 (54-122)||(41743592-41743660)
chr3 (54-128)||(30519668-30519742)
chr3 (62-115)||(10872681-10872734)
chr3 (54-115)||(12744971-12745032)
chr3 (54-115)||(40639865-40639926)
chr3 (54-103)||(52866438-52866487)
chr3 (58-109)||(26367549-26367600)
chr3 (56-115)||(40639781-40639840)
chr3 (54-93)||(43599129-43599168)
chr3 (57-115)||(24075456-24075514)
chr3 (54-128)||(41253927-41254001)
chr3 (54-103)||(12109903-12109952)
chr3 (54-115)||(21217175-21217236)
chr3 (54-103)||(48191736-48191785)
chr3 (55-115)||(2128432-2128492)
chr3 (58-94)||(36344447-36344483)
[»] chr8 (22 HSPs)
chr8 (57-115)||(10934676-10934734)
chr8 (54-109)||(3225850-3225905)
chr8 (54-109)||(7484687-7484742)
chr8 (58-128)||(41387836-41387906)
chr8 (58-115)||(11295673-11295730)
chr8 (54-103)||(13290105-13290154)
chr8 (55-128)||(13964415-13964488)
chr8 (54-115)||(41753767-41753828)
chr8 (54-109)||(1897873-1897928)
chr8 (54-93)||(7258616-7258655)
chr8 (54-92)||(9878947-9878985)
chr8 (54-128)||(44319599-44319673)
chr8 (54-95)||(2116135-2116176)
chr8 (54-115)||(5888345-5888406)
chr8 (54-103)||(10335212-10335261)
chr8 (58-103)||(21435690-21435735)
chr8 (58-115)||(24017792-24017849)
chr8 (58-102)||(13080110-13080154)
chr8 (54-94)||(14700311-14700351)
chr8 (55-103)||(24842078-24842126)
chr8 (54-94)||(33070195-33070235)
chr8 (54-94)||(40640308-40640348)
[»] scaffold0065 (2 HSPs)
scaffold0065 (54-109)||(39179-39234)
scaffold0065 (56-124)||(36926-36994)
[»] scaffold0036 (1 HSPs)
scaffold0036 (54-109)||(89613-89668)
[»] scaffold0009 (1 HSPs)
scaffold0009 (57-103)||(145989-146035)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 6 - 429
Target Start/End: Complemental strand, 4329794 - 4329371
Alignment:
Q  6 aaaatcaacattttttccttcaaaaaatagaaattaaaaatcaacattttatagaccacatacataatttaaggaatgaatctaaaatattgatttttcc 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |    
T  4329794 aaaatcaacattttttccttcaaaaaacagaaattaaaaatcaacattttatagaccacatacataatttaaggaatgaatctagaatgttgatttttgc 4329695  T
Q  106 ttatgatagtaatcagatggtgtgtgtatatatattagtgaagttggtaattccaccttctaatagagctgttattcgtactcttcaagagaattccata 205  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329694 ttataatagtaatcggatggtgtgtgtatatatattagtgaagttggtaattccaccttctaatagagctgttattcgtactcttcaagagaattccata 4329595  T
Q  206 ttttttcttgaattcatgaatcatttcgatagtaagattagattgatcggtatttttcaattaagagaccaaatttctaatttaaaaatttgagggacta 305  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4329594 atttttcttaaattcatgaatcatttcgatagtaagattagattgatcggtatttttcaattaagagaccaaatttctaatttaaaaatttgagggacta 4329495  T
Q  306 aattgataggcttacnnnnnnnnttgaaggttgatagacttacaattttaactactacaatgttggttactcatttttatttggtagagaacgaattaaa 405  Q
    |||||||||||||||        |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  4329494 aattgataggcttacaaaaaaaattgaaggttgatagacttacaattttaattactacaatgttggttactcatttttatttggtagagaacaaattaaa 4329395  T
Q  406 gttgttcattttttgtgggcaaaa 429  Q
    ||||||||||||||||||||||||    
T  4329394 gttgttcattttttgtgggcaaaa 4329371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 15517160 - 15517215
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  15517160 ttatagaccacatacatcatttaatgaatgaatctaaaatattgatttttgcttat 15517215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 34792527 - 34792477
Alignment:
Q  53 tttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||| ||||| |||||||||| |||||||||||||||||||||||||    
T  34792527 tttatagatcacatgcataatttaatgaatgaatctaaaatattgattttt 34792477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 18886378 - 18886317
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||||| || |||||| |||||||||||||||||| |||||| ||||| |||||    
T  18886378 ttatagaccacatatatcatttaatgaatgaatctaaaatattaatttttgcttataatagt 18886317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 34379805 - 34379866
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||| |||||||||||| |||||| ||||||||||||||| ||||||||| ||||| |||||    
T  34379805 ttatcgaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagt 34379866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 11745994 - 11745930
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgat-ttttccttatgatagtaa 117  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||||| |||| ||||| |||||||    
T  11745994 ttatataccacatacatcatttaatgaatgaatctaaaatattgatattttgcttataatagtaa 11745930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 13281604 - 13281666
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagta 116  Q
    |||||| |||||||||| ||||||  ||||||||||||||||||| |||| ||||| ||||||    
T  13281604 ttatagtccacatacatcatttaatcaatgaatctaaaatattgaattttacttataatagta 13281666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 32254895 - 32254965
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    ||||||||||||| |||||| |||||||||||||||||| | |||| ||||| ||||| ||| || |||||    
T  32254895 agaccacatacatcatttaatgaatgaatctaaaatattaacttttgcttataatagtgatcggagggtgt 32254965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 8449643 - 8449570
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||||||||||||||| |||||  |||| |||| |||||||| |||||| ||||| ||||| ||| ||||||||    
T  8449643 tatagaccacatacatcatttattgaataaatccaaaatattaatttttgcttataatagtgatcggatggtgt 8449570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 8458447 - 8458374
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||||||||||||||| |||||  |||| |||| |||||||| |||||| ||||| ||||| ||| ||||||||    
T  8458447 tatagaccacatacatcatttattgaataaatccaaaatattaatttttgcttataatagtgatcggatggtgt 8458374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 11174119 - 11174054
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatc 119  Q
    ||||||| || |||||||||||||  ||||||||||||| ||||||||||  |||| |||||||||    
T  11174119 ttatagatcaaatacataatttaataaatgaatctaaaaaattgatttttatttataatagtaatc 11174054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 26527260 - 26527321
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||||||||||| |||||| ||||||||||||||| || |||||| ||||| |||||    
T  26527260 ttataaaccacatacatcatttaatgaatgaatctaaaatgttaatttttgcttataatagt 26527321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 32254891 - 32254830
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||| |||||||| |||||| |||||| |||||||| || |||||||||||| |||||    
T  32254891 ttatagactacatacatcatttaacgaatgattctaaaatgttaatttttccttataatagt 32254830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 29419864 - 29419912
Alignment:
Q  61 ccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||||||||| |||||| ||||||||||||||| ||||||||| |||||    
T  29419864 ccacatacatcatttaatgaatgaatctaaaatgttgatttttacttat 29419912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 34170147 - 34170099
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||| ||||||||| |||||| ||||||||||||||| |||||||||    
T  34170147 tatagatcacatacatcatttaatgaatgaatctaaaatgttgattttt 34170099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 31158913 - 31158850
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaa 117  Q
    ||||||||||||||||| ||| ||  ||| |||||||||| ||||||||| ||||| |||||||    
T  31158913 ttatagaccacatacattattcaattaataaatctaaaatgttgatttttacttataatagtaa 31158850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 14031764 - 14031822
Alignment:
Q  79 gaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgtgtgtatata 137  Q
    ||||||||||||||||| ||||||| ||||| || || ||| |||||||| ||||||||    
T  14031764 gaatgaatctaaaatatagatttttacttataattgtgatcggatggtgtatgtatata 14031822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 2827629 - 2827674
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgat 99  Q
    ||||||||||||| ||| ||||||  ||||||||||||||||||||    
T  2827629 ttatagaccacatgcatcatttaataaatgaatctaaaatattgat 2827674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 3199788 - 3199739
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||| ||||||||||  |||||| |||||||| ||||||||||||||||    
T  3199788 ttataaaccacatacaacatttaatgaatgaatttaaaatattgattttt 3199739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 20704093 - 20704044
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||||||||| || ||| || |||||||| ||||||||||||||||    
T  20704093 ttatagaccacatatattattgaatgaatgaatttaaaatattgattttt 20704044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 24676 - 24761
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgtgtgtatatata 139  Q
    ||||||||||||||||| |||||| |||||||||||||||||| |||||| ||||| ||||| | | || ||||||| ||||||||    
T  24676 ttatagaccacatacatcatttaatgaatgaatctaaaatattaatttttgcttataatagtgaccggagggtgtgtatatatata 24761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 33075136 - 33075221
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgtgtgtatatatat 140  Q
    |||||||||||||||| |||||| ||||||| |||||||||| |||||| ||||| ||||| | |||||||||| | |||||||||    
T  33075136 tatagaccacatacatcatttaatgaatgaacctaaaatattaatttttgcttataatagtgaccagatggtgtatatatatatat 33075221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 29177780 - 29177709
Alignment:
Q  57 tagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||||||||||||| |||||| | || ||||||||||||||||||||| |||| ||||||| | ||||||||    
T  29177780 tagaccacatacatcatttaatgtataaatctaaaatattgatttttctttataatagtaaccggatggtgt 29177709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 10437707 - 10437768
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||| |||||||||||||||  |||||||||||||| ||||||||| ||||| |||||    
T  10437707 ttatagactacatacataatttaataaatgaatctaaaatgttgatttttgcttataatagt 10437768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 31691325 - 31691285
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattga 98  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  31691325 agaccacatacataatttaatgaatgaatctaaaatattga 31691285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 18652833 - 18652884
Alignment:
Q  52 ttttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||||| ||||||||||| |||||| ||||||||||||||| |||||||||    
T  18652833 ttttataaaccacatacatcatttaatgaatgaatctaaaatgttgattttt 18652884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 28518792 - 28518847
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||||||||||||||| |||||| |||| |||||||||| ||||||||| |||||    
T  28518792 ttatagaccacatacatcatttaatgaatcaatctaaaattttgatttttgcttat 28518847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 35032340 - 35032293
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattt 101  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||    
T  35032340 ttatagactacatacatcatttaatgaatgaatctaaaatattgattt 35032293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 13710360 - 13710434
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    ||||||||| ||||||| |||||| |||| ||| |||||| ||||||||| ||||| ||| | ||||||||||||    
T  13710360 ttatagacctcatacattatttaatgaataaatataaaatgttgatttttacttataataatgatcagatggtgt 13710434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 16602257 - 16602307
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttc 104  Q
    ||||| |||||||||||||||| |  |||||||||||||||||||||||||    
T  16602257 ttataaaccacatacataatttcataaatgaatctaaaatattgatttttc 16602307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 17625714 - 17625784
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||| |||||||| |||||| ||||| ||||||||  ||||||||| ||||| ||||| ||||||||||||    
T  17625714 agactacatacatcatttaatgaatgtatctaaaacgttgatttttgcttataatagtgatcagatggtgt 17625784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 37067676 - 37067619
Alignment:
Q  60 accacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaa 117  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||  |||| |||||||    
T  37067676 accacatacatcatttaatgaatgaatctaaaatattaatttttgtttataatagtaa 37067619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 15062353 - 15062305
Alignment:
Q  56 atagaccacatacataatttaaggaatgaatctaaaatattgatttttc 104  Q
    |||||||| ||| ||||||||| ||||| ||||||||||||||||||||    
T  15062353 atagaccatataaataatttaatgaatgtatctaaaatattgatttttc 15062305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 1100127 - 1100088
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaat 93  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  1100127 ttatagaccacatacatcatttaatgaatgaatctaaaat 1100088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 11795806 - 11795861
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||||||||||||| || |||||| ||||||||  ||||||||||||||| |||||    
T  11795806 ttatagaccacatatatcatttaatgaatgaataaaaaatattgatttttgcttat 11795861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 41005737 - 41005683
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||||| |||||||| ||||||  |||||||||||||| ||||||||| |||||    
T  41005737 tatagactacatacatcatttaataaatgaatctaaaatgttgatttttacttat 41005683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 3100475 - 3100414
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||| |||||||| |||||  ||||||||||||||| || |||||| ||||| |||||    
T  3100475 ttatagactacatacatcatttattgaatgaatctaaaatgttaatttttgcttataatagt 3100414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 43117431 - 43117382
Alignment:
Q  79 gaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    ||||||||||||||||||||||||| ||||| ||||| ||| || |||||    
T  43117431 gaatgaatctaaaatattgatttttgcttataatagtgatcggagggtgt 43117382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 22650926 - 22650886
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaata 94  Q
    ||||||||||||||||| ||||||  |||||||||||||||    
T  22650926 ttatagaccacatacatcatttaataaatgaatctaaaata 22650886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 42958669 - 42958629
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatat 95  Q
    |||| |||||||||||||||||  |||||||||||||||||    
T  42958669 tataaaccacatacataatttattgaatgaatctaaaatat 42958629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 11093600 - 11093532
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcaga 122  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||| ||||| ||||||    
T  11093600 ttatagaccacatacatcatttaatgaatcaatctaaaatattgatttttacttataatagtgatcaga 11093532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 1961379 - 1961453
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||||| ||||| ||||| | | ||||||||    
T  1961379 ttatagaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgacccgatggtgt 1961453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 15916803 - 15916748
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||    
T  15916803 ttatagactacatacattatttaatgaatgaatctaaaatattgatttttgcttat 15916748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 41056954 - 41056884
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||| |||||||| |||||| ||||| |||||||| |||||||||| ||||| ||||| ||||||||||||    
T  41056954 agactacatacatcatttaatgaatgtatctaaaacattgatttttgcttataatagtgatcagatggtgt 41056884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 3121492 - 3121431
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||| ||||||||| ||||||  |||||||||||||||||||||||| ||||| |||||    
T  3121492 ttatagatcacatacattatttaataaatgaatctaaaatattgatttttgcttataatagt 3121431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 15119847 - 15119786
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||||| |||||| ||||||||||||||| || |||||| ||||| |||||    
T  15119847 ttatagaccacatacatcatttaatgaatgaatctaaaatgttaatttttgcttataatagt 15119786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 31024241 - 31024180
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||| |||||||||||| |||||| ||||||||||||||| ||||||||| ||||| |||||    
T  31024241 ttatcgaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagt 31024180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 21183400 - 21183452
Alignment:
Q  57 tagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||| |||||    
T  21183400 tagaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttat 21183452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 38181827 - 38181775
Alignment:
Q  57 tagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  38181827 tagatcacatacatcatttaatgaatgaatctaaaatattgatttttgcttat 38181775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 13333508 - 13333443
Alignment:
Q  63 acatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||||||| |||||| ||||| ||||||||  ||||||||| ||||| ||||| ||||||||||||    
T  13333508 acatacatcatttaatgaatgtatctaaaacgttgatttttgcttataatagtgatcagatggtgt 13333443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 33129144 - 33129083
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||| ||||| || |||||| ||||||| ||||||||||||||||| ||||| |||||    
T  33129144 ttatagactacatatattatttaatgaatgaacctaaaatattgatttttacttataatagt 33129083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 38465859 - 38465798
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||| |||||||||||| |||||| |||| |||||||||| ||||||||| ||||| |||||    
T  38465859 ttatggaccacatacatcatttaatgaattaatctaaaatgttgatttttgcttataatagt 38465798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 26003505 - 26003450
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||| || |||||||| |||||| ||||||| ||||||||||||||||| |||||    
T  26003505 ttatatactacatacatcatttaatgaatgaacctaaaatattgatttttgcttat 26003450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 38618465 - 38618426
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaat 93  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  38618465 ttatagaccacatacatcatttaacgaatgaatctaaaat 38618426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 2544422 - 2544484
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaa 117  Q
    ||||||||| |||||| |||||| ||||||| ||||||  |||||||||  ||||||||||||    
T  2544422 tatagaccaaatacatcatttaatgaatgaacctaaaaagttgatttttgtttatgatagtaa 2544484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 3098196 - 3098257
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||| ||||||| |||||| ||||||||||||||| | ||||||| ||||| |||||    
T  3098196 ttataaaccgcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagt 3098257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 4563942 - 4563995
Alignment:
Q  62 cacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||| ||||||   ||||||||||||||||||||||| ||||| |||||    
T  4563942 cacatacatcatttaatagatgaatctaaaatattgatttttacttataatagt 4563995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 7079440 - 7079379
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||||| || |||||| | |||||| |||||| ||||||||| ||||| |||||    
T  7079440 ttatagaccacatatatcatttaatggatgaatttaaaatgttgatttttgcttataatagt 7079379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 11726573 - 11726626
Alignment:
Q  62 cacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||| |||||| ||||||||||||||| || |||||| ||||| |||||    
T  11726573 cacatacatcatttaatgaatgaatctaaaatgttaatttttgcttataatagt 11726626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 25270926 - 25270987
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||| ||||||| |||||| ||||||||||||||| | ||||||| ||||| |||||    
T  25270926 ttataaaccgcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagt 25270987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 41056958 - 41057019
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||| ||||||| |||||| ||||||||||||||| | ||||||| ||||| |||||    
T  41056958 ttataaaccgcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagt 41057019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 45473147 - 45473098
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||| |||||||| |||||| ||||||||||||||| || ||||||    
T  45473147 ttatagacaacatacatcatttaatgaatgaatctaaaattttaattttt 45473098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 23378015 - 23378067
Alignment:
Q  57 tagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||| ||||||||| ||||||  ||||||||||||||||| |||||| |||||    
T  23378015 tagatcacatacatcatttaataaatgaatctaaaatattaatttttgcttat 23378067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 48083574 - 48083488
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgtgtgtatatatat 140  Q
    ||||||||||||||||| |||||| ||||||| |||||||||| |||||| ||||| ||||| | |||| ||||| | |||||||||    
T  48083574 ttatagaccacatacatcatttaatgaatgaacctaaaatattaatttttgcttataatagtgaccagagggtgtatatatatatat 48083488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 34953966 - 34953905
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||| ||||| |||||    
T  34953966 ttatagaccacatacatcatttaatgaatgaatttaaaatattgatttttgcttataatagt 34953905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 50550189 - 50550250
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||| ||||||||| |||||| ||||||||||||||| |||||||||| |||| |||||    
T  50550189 ttatagatcacatacatcatttaatgaatgaatctaaaatgttgatttttctttataatagt 50550250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 33765857 - 33765912
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||||||||||||||| ||||||  |||||||||||||| ||||||||| |||||    
T  33765857 ttatagaccacatacatcatttaataaatgaatctaaaatgttgatttttgcttat 33765912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 41007747 - 41007692
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||||||||||||||| |||||| |||| ||| |||||||||||||||| |||||    
T  41007747 ttatagaccacatacatcatttaatgaataaatttaaaatattgatttttgcttat 41007692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 41007751 - 41007810
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaa 117  Q
    ||||||||||||| |||||| ||||||||||||||| |||| |||| ||||| |||||||    
T  41007751 agaccacatacatcatttaatgaatgaatctaaaatgttgaattttgcttataatagtaa 41007810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 14967295 - 14967221
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||||| |||||||||| |||||| |||| ||| |||||| ||||||||| ||||||||||| | |||| |||||    
T  14967295 ttataggccacatacatcatttaatgaataaatgtaaaatgttgatttttgcttatgatagtgaccagagggtgt 14967221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 14967303 - 14967369
Alignment:
Q  62 cacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    ||||||||| |||||| ||||||||||||||| ||||||||| ||||| ||||| ||  ||||||||    
T  14967303 cacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagtgattggatggtgt 14967369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 14885389 - 14885340
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||||||||||||||||||| |||| ||| |||||| |||||||||    
T  14885389 ttatagaccacatacataatttaatgaataaatttaaaatgttgattttt 14885340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 14885547 - 14885498
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||||||||||||||||||| |||| ||| |||||| |||||||||    
T  14885547 ttatagaccacatacataatttaatgaataaatttaaaatgttgattttt 14885498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 20621300 - 20621251
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||||||||||||  ||||  |||||||||||||||||||||||||    
T  20621300 ttatagaccacatacatcgtttattgaatgaatctaaaatattgattttt 20621251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 24981911 - 24981972
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||| ||||||| |||||| ||||||||||||||| ||||||||| ||||| |||||    
T  24981911 ttataaaccgcatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagt 24981972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 35544603 - 35544554
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||||||||||||||| |||||| |||||||| |||||| |||||||||    
T  35544603 ttatagaccacatacatcatttaacgaatgaatttaaaatgttgattttt 35544554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 39362879 - 39362928
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||||||||||||| | ||||||  ||||||||||||||||||||||||    
T  39362879 ttatagaccacatacttcatttaataaatgaatctaaaatattgattttt 39362928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 46906931 - 46906870
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||| ||||||| |||||| ||||||||||||||||| ||||||| ||||| |||||    
T  46906931 ttataaaccgcatacatcatttaatgaatgaatctaaaatatagatttttgcttataatagt 46906870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 2122640 - 2122700
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||||||  |||||| |||||||||||||| || ||||||| ||||| |||||    
T  2122640 tatagaccacatacaacatttaatgaatgaatctaaaaaatggatttttgcttataatagt 2122700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 3549849 - 3549917
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcaga 122  Q
    ||||||||||||||||| |||||| |||||||| |||||| || |||||| ||||| ||| | ||||||    
T  3549849 ttatagaccacatacattatttaatgaatgaatttaaaatgttaatttttgcttataataatgatcaga 3549917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 46412755 - 46412699
Alignment:
Q  72 atttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||||| |||||||||||||||||| |||||| ||||| ||||| ||| ||||||||    
T  46412755 atttaatgaatgaatctaaaatattaatttttgcttataatagtgatcggatggtgt 46412699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 50308698 - 50308627
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatgg 125  Q
    |||| ||||| ||||||||||||| |||| |||||||||  ||||||||| ||||| ||||| | |||||||    
T  50308698 ttattgaccaaatacataatttaatgaataaatctaaaaagttgatttttgcttataatagtgaccagatgg 50308627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 14891808 - 14891747
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||| |||||| |||||| ||||||   ||||||||||||||||| |||| |||||    
T  14891808 ttatagaccatatacatcatttaatgaatgatcttaaaatattgatttttctttataatagt 14891747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 47969555 - 47969604
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||||||||| || |||||| ||| ||||||||| |||||||||||    
T  47969555 ttatagaccacataaattatttaatgaaagaatctaaattattgattttt 47969604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 29663737 - 29663784
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||||||||||| || |||||| |||||||||| ||||||||||||||    
T  29663737 tatagaccacatatatcatttaatgaatgaatct-aaatattgattttt 29663784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 31115679 - 31115740
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||| |||||    
T  31115679 ttatagaccacatacataatttaatgaatgaagctaaaatgttgatttttgcttataatagt 31115740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 2943279 - 2943221
Alignment:
Q  57 tagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||| ||||| |||||    
T  2943279 tagaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagt 2943221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 25245216 - 25245274
Alignment:
Q  57 tagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||| ||||| |||||    
T  25245216 tagaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagt 25245274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 3882881 - 3882929
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttt 102  Q
    ||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  3882881 ttatagaccacatacataattcaatgaatgaatctaaaatgttgatttt 3882929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 10095787 - 10095728
Alignment:
Q  56 atagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||| |||||| ||||||||||||||| || |||||| ||||| |||||    
T  10095787 atagaccacatacatcatttaatgaatgaatctaaaatgttaatttttgcttataatagt 10095728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 21586884 - 21586835
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||||||||||||||| ||| ||  ||||||||||||||||||||||||    
T  21586884 ttatagaccacatacatcattgaataaatgaatctaaaatattgattttt 21586835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 21096257 - 21096181
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgtgt 130  Q
    ||||||| |||||| || |||||| |||| ||||||||||||| |||||| ||||| ||| ||||| || |||||||    
T  21096257 ttatagatcacatatattatttaatgaataaatctaaaatattaatttttgcttataataataatcggagggtgtgt 21096181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 3882621 - 3882660
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaat 93  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  3882621 ttatagaccacatatataatttaatgaatgaatctaaaat 3882660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 4089199 - 4089136
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaa 117  Q
    ||||||| || |||||| |||||| |||||||| ||||||||||||||||  |||| |||||||    
T  4089199 ttatagaacatatacatcatttaatgaatgaatataaaatattgatttttgtttataatagtaa 4089136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 26385695 - 26385656
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaat 93  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  26385695 ttatagaccacatacataatttattgaatgaatctaaaat 26385656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 30138858 - 30138803
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||||||||||| |||| |||||| ||||||||| ||||| ||||||||| |||||    
T  30138858 ttatagaccacacacatcatttaatgaatgaatccaaaatgttgatttttgcttat 30138803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 41872121 - 41872176
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||||||||||||||| ||| || ||||||||||||||| | ||||||| |||||    
T  41872121 ttatagaccacatacatcattaaatgaatgaatctaaaatgtagatttttgcttat 41872176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 23818483 - 23818433
Alignment:
Q  65 atacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||| |||||| ||||||||||||||| ||||||||| ||||| |||||    
T  23818483 atacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagt 23818433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 7701258 - 7701197
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||| ||||||| |||||| ||||||||||||||| | ||||||| ||||| |||||    
T  7701258 ttataaaccgcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagt 7701197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 39136636 - 39136684
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttt 102  Q
    ||||||||||||| ||| |||||| ||| ||||||||||| ||||||||    
T  39136636 ttatagaccacattcatcatttaatgaacgaatctaaaatgttgatttt 39136684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 52914068 - 52914129
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||||| |||||| |||||||||||||||||| |||||| ||||| |||||    
T  52914068 ttatagaccacatacatcatttaatgaatgaatctaaaatattaatttttgcttataatagt 52914129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 55936057 - 55936118
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||    
T  55936057 ttatcgaccacatacatcatttaatgaatgaatctaaaatattgatttttgcttataatagt 55936118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 4406311 - 4406237
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    ||||||||||||||||| |||||| |||| |||||||||| ||||||||| ||||| ||||| | | ||||||||    
T  4406311 ttatagaccacatacatcatttaatgaataaatctaaaatgttgatttttacttataatagtgaccggatggtgt 4406237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 32599550 - 32599619
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagat 123  Q
    ||||| ||||||||||| ||||||  ||||||||||||||||| |||||| ||||| ||||| |||||||    
T  32599550 ttataaaccacatacatcatttaataaatgaatctaaaatattaatttttacttataatagtgatcagat 32599619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 12672520 - 12672576
Alignment:
Q  59 gaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||| |||||| |||| ||||||||||||||||||||| |||| |||||    
T  12672520 gaccacatacatcatttaatgaataaatctaaaatattgatttttctttataatagt 12672576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 2582878 - 2582823
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||||||| |||||||| |||||| |||| |||||||||||||||||||| |||||    
T  2582878 ttatagactacatacatcatttaatgaatcaatctaaaatattgatttttgcttat 2582823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 10572791 - 10572740
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttcc 105  Q
    ||||||||||||||||| ||| || ||||||||||||||||||| |||||||    
T  10572791 ttatagaccacatacatcattcaatgaatgaatctaaaatattgttttttcc 10572740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 40952418 - 40952331
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt-gtgtatatatat 140  Q
    |||||||||||||| || |||||| ||||||||||||||| |||||| || ||||| ||||| | | ||| |||| ||||||||||||    
T  40952418 ttatagaccacatatatcatttaatgaatgaatctaaaatgttgattattgcttataatagtgaacggatagtgtagtgtatatatat 40952331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 16170980 - 16171041
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||| |||||||| ||||||  ||| |||||||||| ||||||||||||||| |||||    
T  16170980 ttatagactacatacatcatttaattaataaatctaaaatgttgatttttccttataatagt 16171041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 24798197 - 24798258
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||| ||||| |||||| |||||||| ||||||||| |||||| ||||| |||||    
T  24798197 ttatagaccacgtacatcatttaatgaatgaatttaaaatattaatttttgcttataatagt 24798258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 36786220 - 36786281
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||||||||||| |||| | ||||||||| ||||||||||||||| ||||| |||||    
T  36786220 ttataaaccacatacatcatttgatgaatgaatccaaaatattgatttttgcttataatagt 36786281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 48402481 - 48402542
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||| ||||||| |||||| ||||||||||||||||| ||||||| ||||| |||||    
T  48402481 ttataaaccgcatacatcatttaatgaatgaatctaaaatatagatttttgcttataatagt 48402542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 33694039 - 33694078
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaat 93  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  33694039 ttatagaccacatacataatttaatgaatgaacctaaaat 33694078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 46803478 - 46803533
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||| |||||||||||||||||| ||| ||||||||| | ||||||||| |||||    
T  46803478 ttataaaccacatacataatttaatgaaagaatctaaactgttgatttttacttat 46803533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 19934713 - 19934782
Alignment:
Q  59 gaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||||||||||| |||||  |||||||||||||| || ||||||| ||||| ||||| ||| || |||||    
T  19934713 gaccacatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgatcggagggtgt 19934782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 39235207 - 39235158
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||| ||||||||||| ||||||  |||||||||||||| |||||||||    
T  39235207 ttataaaccacatacatcatttaataaatgaatctaaaatgttgattttt 39235158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 56364396 - 56364457
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||| ||||||| |||||| ||||||||||||||| | ||||||| ||||| |||||    
T  56364396 ttataaaccgcatacatcatttaatgaatgaatctaaaatgtagatttttacttataatagt 56364457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 2254023 - 2253975
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||||||||||| |||||| |||| ||||||||| ||| ||||||    
T  2254023 tatagaccacatacatcatttaatgaataaatctaaaaaattaattttt 2253975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 2582891 - 2582939
Alignment:
Q  67 acataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||| |||||||||||||||||| || ||| ||||| |||||    
T  2582891 acataatttaatgaatgaatctaaaatattaatatttacttataatagt 2582939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 18488598 - 18488658
Alignment:
Q  62 cacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcaga 122  Q
    ||||||||| |||||| || |||||||||||| | ||||||| ||||| ||||| ||||||    
T  18488598 cacatacatcatttaacgattgaatctaaaatgtcgatttttgcttataatagtgatcaga 18488658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 26920742 - 26920702
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaata 94  Q
    ||||||||||| ||||| |||||| ||||||||||||||||    
T  26920742 ttatagaccacgtacatcatttaacgaatgaatctaaaata 26920702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 54164888 - 54164944
Alignment:
Q  59 gaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||| |||||  |||||||||||||| || ||||||| ||||| |||||    
T  54164888 gaccacatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagt 54164944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 55416368 - 55416424
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatct-aaaatattgatttttccttat 109  Q
    ||||||||||||||||| |||||| |||||||| | ||||| ||||||||| |||||    
T  55416368 ttatagaccacatacattatttaatgaatgaatataaaaattttgatttttgcttat 55416424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 37897752 - 37897813
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||||||||||||||| |||||||| |||||| ||||||||| ||||| |||||    
T  37897752 ttatagaccacatacataatttaatgaatgaatttaaaatgttgatttttgcttataatagt 37897813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 22497019 - 22496960
Alignment:
Q  56 atagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||| |||||| |||||||||||||||||| |||||| ||||| |||||    
T  22497019 atagaccacatacatcatttaatgaatgaatctaaaatattaatttttgcttataatagt 22496960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 24722757 - 24722696
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||||| ||||||  ||||||||||||||||| |||||| ||||| |||||    
T  24722757 ttatagaccacatacatcatttaataaatgaatctaaaatattaatttttgcttataatagt 24722696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 35511843 - 35511896
Alignment:
Q  56 atagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||| |||||    
T  35511843 atagaccacatacataattcaatgaatgaatctaaaatgttgatttttacttat 35511896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 45736757 - 45736696
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||||| |||||| ||||||||||||| ||| ||||||| ||||| |||||    
T  45736757 ttatagaccacatacatcatttaatgaatgaatctaaactatcgatttttgcttataatagt 45736696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 52215950 - 52216011
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||||| |||||| || |||||||||||| ||||||||| ||||| |||||    
T  52215950 ttatagaccacatacatcatttaatgagtgaatctaaaatgttgatttttgcttataatagt 52216011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 54595860 - 54595799
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||| |||||||||||| |||||| ||||||||||||||| ||||||||| ||||| |||||    
T  54595860 ttatcgaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagt 54595799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 41743660 - 41743592
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcaga 122  Q
    |||||||||| |||||| |||||| ||| |||||||||||||| |||||| ||||| ||||||| ||||    
T  41743660 ttatagaccatatacatcatttaatgaacgaatctaaaatattaatttttgcttataatagtaaccaga 41743592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 30519668 - 30519742
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    ||||||| ||||||||| |||||| ||||||||||||||| ||| ||||| ||||| ||||| | |||| |||||    
T  30519668 ttatagatcacatacatcatttaatgaatgaatctaaaatgttggtttttgcttataatagtgaccagagggtgt 30519742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 10872734 - 10872681
Alignment:
Q  62 cacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||| |||||| |||||||| |||||||||||||||| ||||| |||||    
T  10872734 cacatacatcatttaatgaatgaatttaaaatattgatttttgcttataatagt 10872681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 12744971 - 12745032
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||||| |||||| ||||| ||||||||| || |||||| ||||| |||||    
T  12744971 ttatagaccacatacatcatttaatgaatgtatctaaaatgttaatttttgcttataatagt 12745032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 40639865 - 40639926
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||||| |||||| |||| ||| |||||| ||||||||| ||||| |||||    
T  40639865 ttatagaccacatacatcatttaatgaataaatttaaaatgttgatttttgcttataatagt 40639926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 52866487 - 52866438
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||||||||||||||| |||||| ||||||||||||||| || ||||||    
T  52866487 ttatagaccacatacatcatttaatgaatgaatctaaaatgttaattttt 52866438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 26367549 - 26367600
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||||||||||| |||||  |||||||||||||| |||||||||| |||||    
T  26367549 agaccacatacatcatttattgaatgaatctaaaacattgatttttgcttat 26367600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 40639781 - 40639840
Alignment:
Q  56 atagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||| |||||| |||||||| |||||| || |||||| ||||| |||||    
T  40639781 atagaccacatacatcatttaatgaatgaatttaaaatgttaatttttgcttataatagt 40639840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 43599168 - 43599129
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaat 93  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  43599168 ttatagatcacatacatcatttaaggaatgaatctaaaat 43599129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 24075514 - 24075456
Alignment:
Q  57 tagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||| || |||||| ||||||||||||||| ||| ||||| ||||| |||||    
T  24075514 tagaccacataaatcatttaatgaatgaatctaaaatgttgttttttgcttataatagt 24075456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 41254001 - 41253927
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    ||||| ||||||||||| |||||| |||||||| |||||| |||||||||  |||| ||||| | | ||||||||    
T  41254001 ttataaaccacatacatcatttaatgaatgaatataaaatgttgatttttgattataatagtgaccggatggtgt 41253927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 12109903 - 12109952
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||||||||||||||| | |||| ||||||| ||||||| |||||||||    
T  12109903 ttatagaccacatacatcaattaatgaatgaaactaaaatgttgattttt 12109952  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 21217236 - 21217175
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||| ||| ||||||| |||||| ||||||||||||||| | ||||||| ||||| |||||    
T  21217236 ttataaaccgcatacatcatttaatgaatgaatctaaaatgtagatttttgcttataatagt 21217175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 48191785 - 48191736
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||| ||||||||||| |||||| ||||||||||||||| || ||||||    
T  48191785 ttataaaccacatacatcatttaatgaatgaatctaaaatgttaattttt 48191736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 2128432 - 2128492
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||||||| |||||  |||||||||||||| ||  |||||| ||||| |||||    
T  2128432 tatagaccacatacatcatttattgaatgaatctaaaacatgaatttttgcttataatagt 2128492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 36344447 - 36344483
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaata 94  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  36344447 agaccacatacatcatttaatgaatgaatctaaaata 36344483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 10934676 - 10934734
Alignment:
Q  57 tagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||| ||||| |||||    
T  10934676 tagaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttataatagt 10934734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 3225850 - 3225905
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||||||||||||||| |||||| ||||||| | ||||||||||||||| |||||    
T  3225850 ttatagaccacatacatcatttaatgaatgaaccaaaaatattgatttttgcttat 3225905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 7484687 - 7484742
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||| |||||||||||| |||||| ||||||||||||||| ||||||||| |||||    
T  7484687 ttatcgaccacatacatcatttaatgaatgaatctaaaatgttgatttttgcttat 7484742  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 41387836 - 41387906
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    ||||||||||||| |||||| ||||||||||||||||| | ||||| ||||| ||||| | | ||||||||    
T  41387836 agaccacatacattatttaatgaatgaatctaaaatatagttttttgcttataatagtgaccggatggtgt 41387906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 11295730 - 11295673
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||| |||||| ||||| ||||||||| ||||||||| ||||| |||||    
T  11295730 agaccacatacatcatttaatgaatgtatctaaaatgttgatttttgcttataatagt 11295673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 13290105 - 13290154
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||||||||| || |||||| |||||||||||||||||| ||||||    
T  13290105 ttatagaccacatatatcatttaatgaatgaatctaaaatattaattttt 13290154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 13964488 - 13964415
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||||||||||||||| |||||  |||||||| |||||| ||||||||| ||||| ||||| | |||| |||||    
T  13964488 tatagaccacatacatcatttattgaatgaatttaaaatgttgatttttgcttataatagtgaccagagggtgt 13964415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 41753828 - 41753767
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||||||| |||||| |||||||| |||||| |||| |||| ||||| |||||    
T  41753828 ttatagaccacatacatcatttaatgaatgaatttaaaatgttgaattttgcttataatagt 41753767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 1897928 - 1897873
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||||||| |||||||| |||||| |||| ||| |||||||||||||||| |||||    
T  1897928 ttatagacaacatacattatttaatgaataaatataaaatattgatttttgcttat 1897873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 7258655 - 7258616
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaat 93  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  7258655 ttatagaccacatacattatttaatgaatgaatctaaaat 7258616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 9878985 - 9878947
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaa 92  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  9878985 ttatagactacatacataatttaatgaatgaatctaaaa 9878947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 44319599 - 44319673
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatggtgt 128  Q
    |||||||| |||||||| ||||||  ||| | ||||||||||| |||||| ||||| ||||| ||| ||||||||    
T  44319599 ttatagactacatacatcatttaataaattattctaaaatattaatttttgcttataatagtgatcggatggtgt 44319673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 2116176 - 2116135
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatat 95  Q
    ||||||||||||||||| ||| || |||||||||||||||||    
T  2116176 ttatagaccacatacatcattaaatgaatgaatctaaaatat 2116135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 5888406 - 5888345
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    |||||||| |||||||| |||||| ||||||||||||||  || |||||| ||||| |||||    
T  5888406 ttatagacaacatacatcatttaatgaatgaatctaaaacgttaatttttgcttataatagt 5888345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 10335212 - 10335261
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    ||||||||||| || || ||||||  ||||||||||||||||||||||||    
T  10335212 ttatagaccacctatatcatttaataaatgaatctaaaatattgattttt 10335261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 21435735 - 21435690
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||||||||||||||  |||||||| ||||| ||||||||||    
T  21435735 agaccacatacataatttattgaatgaatttaaaacattgattttt 21435690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 24017792 - 24017849
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagt 115  Q
    ||||||||||||| ||||||  ||| |||||||||| ||||||||| ||||| |||||    
T  24017792 agaccacatacatcatttaattaataaatctaaaatgttgatttttgcttataatagt 24017849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 13080154 - 13080110
Alignment:
Q  58 agaccacatacataatttaaggaatgaatctaaaatattgatttt 102  Q
    |||| |||||||| |||||| ||||||||||||||| ||||||||    
T  13080154 agactacatacatcatttaatgaatgaatctaaaatgttgatttt 13080110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 14700311 - 14700351
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaata 94  Q
    ||||||||||||||||| ||||||  |||||||||||||||    
T  14700311 ttatagaccacatacattatttaataaatgaatctaaaata 14700351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 24842078 - 24842126
Alignment:
Q  55 tatagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||||||||||| ||||||  ||| |||||||||||| |||||||    
T  24842078 tatagaccacatacatcatttaataaataaatctaaaatatcgattttt 24842126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 33070235 - 33070195
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaata 94  Q
    |||||||| |||||||| |||||| ||||||||||||||||    
T  33070235 ttatagactacatacatcatttaatgaatgaatctaaaata 33070195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 40640348 - 40640308
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaata 94  Q
    ||||||||||| ||||| |||||| ||||||||||||||||    
T  40640348 ttatagaccacgtacatcatttaatgaatgaatctaaaata 40640308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 39179 - 39234
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    |||||||||| |||||| |||||| ||||||||||||||| ||||||||| |||||    
T  39179 ttatagaccatatacatcatttaatgaatgaatctaaaattttgatttttgcttat 39234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 36926 - 36994
Alignment:
Q  56 atagaccacatacataatttaaggaatgaatctaaaatattgatttttccttatgatagtaatcagatg 124  Q
    ||||| || |||||| |||||| ||||||||||||||| |||||||||  |||| ||| ||| ||||||    
T  36926 atagatcaaatacatcatttaatgaatgaatctaaaatgttgatttttgtttataataataaccagatg 36994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 89668 - 89613
Alignment:
Q  54 ttatagaccacatacataatttaaggaatgaatctaaaatattgatttttccttat 109  Q
    ||||||| ||||||||| |||||| ||| ||||||||||| ||||||||| |||||    
T  89668 ttatagatcacatacatcatttaatgaaagaatctaaaatgttgatttttgcttat 89613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 146035 - 145989
Alignment:
Q  57 tagaccacatacataatttaaggaatgaatctaaaatattgattttt 103  Q
    |||||||||||||| |||||| |||||||||||||||  ||||||||    
T  146035 tagaccacatacatcatttaatgaatgaatctaaaatgatgattttt 145989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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