View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_32 (Length: 237)
Name: NF5011_low_32
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 27946301 - 27946530
Alignment:
| Q |
1 |
tgaaattttagatatacctctaaatttccaaaattcattgatcagtttgtacttatcagattttgatgctagttgttgttaaggtcattgtaaaatggac |
100 |
Q |
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| T |
27946301 |
tgaaattttagatatacctctaaatttccaaaattcattgatcagtttgtacttatctgattttgatgctagttgttgttaaggtcattgtaaaatggac |
27946400 |
T |
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| Q |
101 |
ttctttgatacccgttttaattgagtcaaattgtacagcagatacaagtattttctaattggtcagaggatgagataaaggctagccaagactgataaga |
200 |
Q |
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| T |
27946401 |
ttctttgatacccgttttaattgagtcaaatggtacagcagatacaagtattttctaatttgtgagaggatgagataaaggctagccaagactgataaga |
27946500 |
T |
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| Q |
201 |
ggaatg-catcaaagaatatatgatgatgt |
229 |
Q |
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| T |
27946501 |
ggaatgccatcaaagaatatatgatgatgt |
27946530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27437938 - 27438020
Alignment:
| Q |
1 |
tgaaattttagatatacctctaaatttccaaaattcattgatcagtttgtacttatcagattttgatgctagttgttgttaag |
83 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27437938 |
tgaaattttagatatacctctaaatttccaaaatttattgatcagtttgtacttatcagattttgatgctagttgtggttaag |
27438020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 27548432 - 27548386
Alignment:
| Q |
18 |
ctctaaatttccaaaattcattgatcagtttgtacttatcagatttt |
64 |
Q |
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| T |
27548432 |
ctctaaatttccaaaattcattgatcagtttgtacttatcagatttt |
27548386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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