View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_34 (Length: 206)
Name: NF5011_low_34
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 32826913 - 32827083
Alignment:
| Q |
20 |
gttgggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaaca |
119 |
Q |
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| T |
32826913 |
gttgggatctagtttcgaggcttgttgtccttgtacagaatgccgagattttaagggaaaagtaatcccttctaataaaactctgtcaattgcagcaaca |
32827012 |
T |
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| Q |
120 |
atgtcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttgct |
190 |
Q |
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| T |
32827013 |
acgtcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttgct |
32827083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 39856430 - 39856599
Alignment:
| Q |
19 |
agttgggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaac |
118 |
Q |
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| T |
39856430 |
agttgggatccagcttcgagacttcttgtttttgaacagaatggtgagattttaaggaaagagtaatcccttctgataacactctgtcgatcgcaccaat |
39856529 |
T |
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| Q |
119 |
aatgtcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttg |
188 |
Q |
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| T |
39856530 |
gacatcctcatctatcatagcatcaatttctttcaagtctttgctgacaaattttaaagtgttggctttg |
39856599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 182
Target Start/End: Complemental strand, 39737644 - 39737503
Alignment:
| Q |
41 |
ttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagca |
140 |
Q |
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| T |
39737644 |
ttctcgtccttggacagaatgctgggattttaaggaaagagtaatcccttccgataaaactctgtcaattgccgcaatgacatcctcatctaccatagca |
39737545 |
T |
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| Q |
141 |
tcaatttcttcaaagtctttgctgacaaactttgaagtgttg |
182 |
Q |
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| T |
39737544 |
tcaaattcttcagagtctatgctgactaattttgaagtgttg |
39737503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 39897025 - 39897150
Alignment:
| Q |
40 |
cttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagc |
139 |
Q |
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| T |
39897025 |
cttcttctccttgtacagaattacgggactctaaggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagc |
39897124 |
T |
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| Q |
140 |
atcaatttcttcaaagtctttgctga |
165 |
Q |
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| T |
39897125 |
atcaatttcttccaagtctatgctga |
39897150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 161
Target Start/End: Complemental strand, 38980491 - 38980370
Alignment:
| Q |
40 |
cttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagc |
139 |
Q |
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|||||||| |||| ||| ||||| ||||||||| || || |||||||||||| |||||||||||| || | ||||| | ||||||||||||||||| |
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| T |
38980491 |
cttcttgttcttggacagaatgctgagattttacggaaatggtaatcccttctgataaaactctgttgatagaagcaatgacatcctcatctatcatagc |
38980392 |
T |
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| Q |
140 |
atcaatttcttcaaagtctttg |
161 |
Q |
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| T |
38980391 |
atcaacttctttcaagtctttg |
38980370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 39863653 - 39863763
Alignment:
| Q |
40 |
cttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagc |
139 |
Q |
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||||||||||||| ||| ||||| || ||| ||| | || ||| ||||||| |||||||| |||| |||||||||| || |||||| |||||||||| |
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| T |
39863653 |
cttcttgtccttgaacagaatgctgaaattgtaatgaaatggtattcccttcggataaaactttgtcgattgcagcaataacatcctcacctatcatagc |
39863752 |
T |
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| Q |
140 |
atcaatttctt |
150 |
Q |
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|||||| |||| |
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| T |
39863753 |
atcaatatctt |
39863763 |
T |
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