View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_4 (Length: 422)
Name: NF5011_low_4
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 36 - 402
Target Start/End: Original strand, 29238499 - 29238864
Alignment:
| Q |
36 |
tataagtttataacatctccccactgaatcaaaaggttaatacaaaacaaaagcgagtacaaggtttataacatttcacttgaaattcagctttaaccaa |
135 |
Q |
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| T |
29238499 |
tataagtttataacatctccccgctgaatcaaaag-ttaatacaaaacaaaagcgagtacaaggtttataacatttcacttgaaattgagctttaaccaa |
29238597 |
T |
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| Q |
136 |
atcaatttaacaaaccaattaaattcattccaaacatgtctgattaagatttgcccaaacatacaatttcaaatttccgaacatcaagctattaatgctg |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29238598 |
atcaatttaacaaaccaattaaattcattccaaacatgtctgattaagatttgcccaaacatacaatttcaaatttctgaacatcaagctattaatgctg |
29238697 |
T |
|
| Q |
236 |
gtaatgtttcctaaaaagggtaccctttggatgttatagtggaatatcttttaaaagaaggtggggagtcctagtttacccaaaaataaaagtgaagttg |
335 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29238698 |
gtaatgtttcctaaaaagggtacccattggatgttatagtggaatatcttttaaaagaaggtggggagtcctagtttacccaaaaataaaagtaaagttg |
29238797 |
T |
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| Q |
336 |
gacctttttataaattattacttgacttgttacttaggtattttatgcgtagtattattaactttat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29238798 |
gacctttttataaattattacttgacttgttacttaggtattttatgcgtagtattattaactttat |
29238864 |
T |
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