View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_5 (Length: 419)
Name: NF5011_low_5
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 402
Target Start/End: Original strand, 116037 - 116430
Alignment:
| Q |
11 |
cacagacaacaccagcag--cagcaacaacaaaagaatcatggtaggaatcgatctaaacaacgtcaagatcttgatgcatcaattgccaaattttcttt |
108 |
Q |
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| T |
116037 |
cacaaacaacaccagcagagcagcaacaacaaaagaatcatggtaggaatcgatctaaacaacgtcaagatcttgatgcatcaattgccaaattttcttt |
116136 |
T |
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| Q |
109 |
gaagaataagggaagaaggatagatagtgtgatctgattgtgagattcatatattccaaatataaatagtatatctatttcacatagcagaactaatgtc |
208 |
Q |
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| T |
116137 |
gaagaataagggaagaaggatagatagtgtgatctgattgtgagattcatatattccaaatataaatagtatatctatttcacatagcagaactaatgtc |
116236 |
T |
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| Q |
209 |
ccaagtatgtttggtggagtggatcttgtagaagaaagtatattcaaaatggctactatatccatagtgacaacattttttgtgttgccaggtattgaca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116237 |
ccaagtatgtttggtggagtggatcttgtagaagaaagtatattcaaaatggctactatatccatagtgacaacattttttgtgttgccaggtattgaca |
116336 |
T |
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| Q |
309 |
gtagcatatggtcccaatatataggatgtaaaattctctatgtaactctacattcttttaataattttcatgttaaccctccatttaatagaat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116337 |
gtagcatatggtcccaatatataggatgtaaaattctctatgtaactctacattcttttaataattttcatgttaaccctccatttaatagaat |
116430 |
T |
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