View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_6 (Length: 402)
Name: NF5011_low_6
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_6 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: scaffold0777 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 1861 - 1475
Alignment:
| Q |
1 |
taatgtggttaaggtgacttgtccaacatcaaattgttcttcaaaattgttgccaagacatttgcaacatattttgtctaaagaatttatggatcgatgg |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
1861 |
taatgtggttaaggtgacttgtccaactccaaattgttctgcaaaattgttgccaagacatttgcaacatattttgcctaaagaatttatcgatcgatgg |
1762 |
T |
|
| Q |
101 |
gaattggcaaagtatgagtctaaaattgcattggagcaaaagacttattgtgcattcaaggattgttctgttttgctggtgaatgataatgatatgggag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1761 |
gagttggcaaagtatgagtctaaaattgcattggagcaaaagacttattgtgcattcaaggattgttctgttttgctggtgaatgataatgataggggag |
1662 |
T |
|
| Q |
201 |
aggttttgactagttgcgagtgtccgtcttgtcaccggctattctgtgcacagtgtaaggttccatggcatgcggagatgaactgtcaggaatttcaaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1661 |
aggttttgactagttgcgagtgtccgtcttgtcaccggctattctatgcacaatgtaaggttccatggcatgcggagatgaactgtcaggaatttcaaga |
1562 |
T |
|
| Q |
301 |
tttgaaacacaatacaaatgaagtagatttggatgataagtttttgaagttagctaaaagaaacaagtggcagagatgtccaaattg |
387 |
Q |
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| T |
1561 |
tttgaaacacaatacaaatgaagtagatttggatgataagtttttgaagttagctaaaagaaacaagtggcagagatgtccaaattg |
1475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 24930071 - 24930457
Alignment:
| Q |
1 |
taatgtggttaaggtgacttgtccaacatcaaattgttcttcaaaattgttgccaagacatttgcaacatattttgtctaaagaatttatggatcgatgg |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||| |
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| T |
24930071 |
taatgtggttaaggtgacttgtccaactccaaattgttctgcaaaattgttgccaagacatttgcaacatattttgcctaaataatttatagatctatgg |
24930170 |
T |
|
| Q |
101 |
gaattggcaaagtatgagtctaaaattgcattggagcaaaagacttattgtgcattcaaggattgttctgttttgctggtgaatgataatgatatgggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24930171 |
gaattggcaaagtatgagtctaaaattgcattggagcaaaagacttattgtgcattcaaggattgttctgttttgctggtgaatgataatgataagggag |
24930270 |
T |
|
| Q |
201 |
aggttttgactagttgcgagtgtccgtcttgtcaccggctattctgtgcacagtgtaaggttccatggcatgcggagatgaactgtcaggaatttcaaga |
300 |
Q |
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| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
24930271 |
atgttttgactagttgcgagtgtccgtcttgtcatcggctgttctgtgcacagtgtaaggttccatggcatgcggagatgaattgtcaggagtttcaaga |
24930370 |
T |
|
| Q |
301 |
tttgaaacacaatacaaatgaagtagatttggatgataagtttttgaagttagctaaaagaaacaagtggcagagatgtccaaattg |
387 |
Q |
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|||||||| | ||| ||||||| ||||||||||||||||||||||| |||||||||||| ||| || ||| |||||||||||||||| |
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| T |
24930371 |
tttgaaacgcgataaaaatgaaatagatttggatgataagtttttggagttagctaaaataaataaatggaagagatgtccaaattg |
24930457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 387
Target Start/End: Complemental strand, 24976805 - 24976420
Alignment:
| Q |
2 |
aatgtggttaaggtgacttgtccaacatcaaattgttcttcaaaattgttgccaagacatttgcaacatattttgtctaaagaatttatggatcgatggg |
101 |
Q |
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|||||||||||||||||||||||||| ||||||||| | ||||| ||| ||||||||| ||||||||||| ||| ||||||||| ||| |||||| |
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| T |
24976805 |
aatgtggttaaggtgacttgtccaactccaaattgttttgtgaaatttgagccgagacatttgaaacatattttgcctagagaatttattgatagatggg |
24976706 |
T |
|
| Q |
102 |
aattggcaaagtatgagtctaaaattgcattggagcaaaagacttattgtgcattcaaggattgttctgttttgctggtgaatgataatgatatgggaga |
201 |
Q |
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|| | ||| |||||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||| |||| ||||||||| ||| ||| | |
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| T |
24976705 |
aacttgcagtgtatgagtctaaaattgcattggaccaaaagacttattgtccatttaagaattgttctgttttgttggttaatgataataataggggtgt |
24976606 |
T |
|
| Q |
202 |
ggttttgactagttgcgagtgtccgtcttgtcaccggctattctgtgcacagtgtaaggttccatggcatgcggagatgaactgtcaggaatttcaagat |
301 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
24976605 |
ggttttgactagttgcgagtgtccatcttgtcaccgactattttgtgcacaatgtaaggttccatggcatgcggagatgaattgtcaggagtttcaagat |
24976506 |
T |
|
| Q |
302 |
ttgaaacacaatacaaatgaagtagatttggatgataagtttttgaagttagctaaaagaaacaagtggcagagatgtccaaattg |
387 |
Q |
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||||||| || ||| ||| ||||||||||||||| |||||| |||| ||||| ||||| |||||||||||||| |||||||| |
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| T |
24976505 |
ttgaaacgtcctaaaaaggaacaagatttggatgataaatttttggagttggctaacagaaagaagtggcagagatgcccaaattg |
24976420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 25017883 - 25017944
Alignment:
| Q |
212 |
agttgcgagtgtccgtcttgtcaccggctattctgtgcacagtgtaaggttccatggcatgc |
273 |
Q |
| |
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||||| || ||||| |||||||| |||||||||||||||| ||| | |||||||||||||| |
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| T |
25017883 |
agttgtgaatgtccttcttgtcataggctattctgtgcacaatgtgaagttccatggcatgc |
25017944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 24971850 - 24971762
Alignment:
| Q |
212 |
agttgcgagtgtccgtcttgtcaccggctattctgtgcacagtgtaaggttccatggcatgcggagatgaactgtcaggaatttcaaga |
300 |
Q |
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||||| || |||||||||||||| |||| ||||||| ||| ||||| ||||||||||| || || | ||| || | |||||||||||| |
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| T |
24971850 |
agttgtgaatgtccgtcttgtcataggctcttctgtgtacaatgtaacgttccatggcacgcagataagaattgccgggaatttcaaga |
24971762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 33532259 - 33532216
Alignment:
| Q |
341 |
tttttgaagttagctaaaagaaacaagtggcagagatgtccaaa |
384 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||| |
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|
| T |
33532259 |
tttttgaagttggctaaaagagaaaagtggcagagatgtccaaa |
33532216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 736027 - 736071
Alignment:
| Q |
143 |
acttattgtgcattcaaggattgttctgttttgctggtgaatgat |
187 |
Q |
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| T |
736027 |
acttattgtccattcaagaattgttcggttttgttggtgaatgat |
736071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Original strand, 16869088 - 16869131
Alignment:
| Q |
341 |
tttttgaagttagctaaaagaaacaagtggcagagatgtccaaa |
384 |
Q |
| |
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||||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
16869088 |
tttttgaagttggctaaaagagaaaagtggcagagatgtccaaa |
16869131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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