View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_8 (Length: 383)
Name: NF5011_low_8
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 8441495 - 8441154
Alignment:
| Q |
10 |
ataatactgctattgaaaatataaggtttggttaggtcc-tatggtgttggaatcagcttttcaaccatttcatgctttggttgtcttttaacttgttga |
108 |
Q |
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| T |
8441495 |
ataacactgctgttgaaaatataaggtttggttaggtccctatggtgttggaatcaacttttcaaccatttcatgctttggttgtcttttaacttgttga |
8441396 |
T |
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| Q |
109 |
tcaaattatcatcattgagatcacttgtaattgtggtgaaaacgcgactgcagtaagatagaataaaaaagctgttggttagagattgtgtgtgcagtaa |
208 |
Q |
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| T |
8441395 |
tcaaattgacatcattgagatcacttgtagttgtggtcaaaacgcgactgcagtaagataaaataaaaaagctgttggttagagattgtgtgtgcagtaa |
8441296 |
T |
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| Q |
209 |
gataaataaaacagtgttggttagagattgtgtgtgcccctctacgggctgatccaagcataaaactgtgtctgcgctgctctctaaagtcagcttgtgt |
308 |
Q |
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| T |
8441295 |
gataaataaaaaggtgttggttagagattgtgtgtgcccctctacgggctgatccaagcataaaactgtgtttgcgctgctctctaaagtcagcttgtgt |
8441196 |
T |
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| Q |
309 |
agagacctgcacgagacacactgtgtatcgaaagaattagta |
350 |
Q |
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| T |
8441195 |
agagacctacacgagacacactgtgtatcgaaagaattagta |
8441154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 349
Target Start/End: Complemental strand, 8443127 - 8443053
Alignment:
| Q |
275 |
tgtgtctgcgctgctctctaaagtcagcttgtgtagagacctgcacgagacacactgtgtatcgaaagaattagt |
349 |
Q |
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| T |
8443127 |
tgtgtttgtgctgctctctgaagtcagctcgtgtagagacctacaccagacacactgtgtgacgaaagaattagt |
8443053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 8443242 - 8443177
Alignment:
| Q |
30 |
ataaggtttggttaggtcc-tatggtgttggaatcagctttt-caaccatttcatgctttggttgt |
93 |
Q |
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| T |
8443242 |
ataaggtttggctaggtccctatgatgttgaaatcagcttttgcaaccctttcatgctttggttgt |
8443177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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