View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_9 (Length: 365)
Name: NF5011_low_9
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 355
Target Start/End: Original strand, 4644107 - 4644447
Alignment:
| Q |
15 |
agaatgcacaagagacagatcatccacacggacgaagatcgaaaatggccaaatcgaagagatcctatgcaaaggaactattgtatgcaaagaccgatta |
114 |
Q |
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| T |
4644107 |
agaatgcacaagagacagatcatccacacggacgaagatcgaaaatggccaaatcgaagagatcctatgcaaaggaactattgtatgcaaagaccgatta |
4644206 |
T |
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| Q |
115 |
tggcttatccaccatatcattctaatcacacctttcctccagctcctgcatattccatgtggggccaacatggaagtcaaacagctggtgtaccgatttg |
214 |
Q |
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| T |
4644207 |
tggcttatccaccatatcattctaatcacacctttcctccagctcctgcatatcccatgtggggccaacatggaagtcaaacagctggtgtaccgatttg |
4644306 |
T |
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| Q |
215 |
gagtcctccgggttatcctctatggcagcctacagaaagttggcattggaagccatatccgccaggggtaatccttttatccgaaaccaaagcaggatat |
314 |
Q |
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| T |
4644307 |
gagtcctccgggttatcctctatggcagcctacagaaagttggcattggaagccatatccgccaggggtaatctttttatccgaaaccaaagcaggatat |
4644406 |
T |
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| Q |
315 |
acattttttccgttcatatgtttggcttgtttgcgcctttg |
355 |
Q |
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| T |
4644407 |
acattttttccgttcatatgtttggcttgtttgcgcctttg |
4644447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 275
Target Start/End: Complemental strand, 40801779 - 40801546
Alignment:
| Q |
48 |
gaagatcgaaaatggccaaatcgaagagatcctatgcaaaggaactattgtatgcaaagaccgattatggc---ttatccaccatatcattctaatcaca |
144 |
Q |
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| T |
40801779 |
gaagatcggaaatggctaaatccaagggatccaactcaaaggaactattgtcttcaaagaccaattatgcccggtcctccatcatattattctaaccata |
40801680 |
T |
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| Q |
145 |
cctttcctcc---agctcctgcatattccatgtggggccaacatggaagtcaaacagctggtgtaccgatttggagtcctccgggttatcctctatggca |
241 |
Q |
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| T |
40801679 |
cccttcctcctctagctcctttatatcccatgtggggacaatctggaactcaaacggctggcatgcaggtttggggccattctggttatcccgtgtggca |
40801580 |
T |
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| Q |
242 |
gcctacagaaagttggcattggaagccatatccg |
275 |
Q |
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| T |
40801579 |
gcctacagaaagttggcattggaaaccatttccg |
40801546 |
T |
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