View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5012-Insertion-4 (Length: 834)
Name: NF5012-Insertion-4
Description: NF5012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5012-Insertion-4 |
 | |
|
| [»] scaffold0148 (1 HSPs) |
| | |
|
| [»] scaffold0280 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0148 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 10 - 789
Target Start/End: Complemental strand, 27655 - 26885
Alignment:
| Q |
10 |
tccttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27655 |
tccttcaaactgttggatctggacacacagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaa |
27556 |
T |
|
| Q |
110 |
ttagacataggtatgcatatgatggttaaattagagacatatttctctcttccnnnnnnnnnatataaaattagaaacaaattcatgattctgaagattc |
209 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27555 |
ttagacataggtatgcatatgatgattaaattagagacatatttctctcttcttctttttttatataaaattagaaacaaattcatgattctgaaaattc |
27456 |
T |
|
| Q |
210 |
cttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27455 |
cttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacc |
27356 |
T |
|
| Q |
310 |
tcgcatacttcaactttagatgcaatactacaacgggccaaggtcaccttagcttcacggccgccaacaacgttagttacagagtcattcgtgttgatca |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
27355 |
tcgcatacttcaactttagatgcaataccacaacaggccaaggtcaccttagcttcacggccgctaacaacgttagttacagagttattcgtgttgatca |
27256 |
T |
|
| Q |
410 |
aagtagaagaaagtttacccttcaaaatcaggattattcctttactagttgtgatgaaggatctaaacggacaggaagtctgaacgtttctttaccgttt |
509 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27255 |
aagtagaagaaagcttacccttcataatgaggattattcctttactagttgtgatgaaggatctaaacggacaggaagtctgaacgtttctttaccgttt |
27156 |
T |
|
| Q |
510 |
cgcatgaccagtgacgatacgtgctctgaacaacttgtagttagttgggaaccaccttctgaacccatctgtaataactctgttgattgccatggctgga |
609 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27155 |
cgcatgaccagtgacaatacgtgctctgaacaacttgaagttagttgggaaccaccttccgaacccatctgtaataactctgttgattgccatggctgga |
27056 |
T |
|
| Q |
610 |
aacattctacctgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcgaatctttaatttgtaccaaaagtaagtattaatattc |
709 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27055 |
accattctacttgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcgaatctttaaattgtaccaaaagtaagtattaat---- |
26960 |
T |
|
| Q |
710 |
tattattcatgtaactaagaatatttacaaattcacttaatttgatgaatttggattataggtgaagttgaaaaagtaaa |
789 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
26959 |
----attcatgtaactaagaata-ttacaaattcacttaatttgatgaatttggattatagctgaagttaaaaaggtaaa |
26885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 122; Significance: 4e-62; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 201 - 673
Target Start/End: Complemental strand, 2307 - 1838
Alignment:
| Q |
201 |
tgaagattccttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaact |
300 |
Q |
| |
|
||||||||||||||||| || |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| || |
|
|
| T |
2307 |
tgaagattccttttattgatatttgcagcaccaactccaagaacttgtgagccttgtggtacaaacacagtcccttatcctctcaataccagacccatct |
2208 |
T |
|
| Q |
301 |
gtggagacctcgcatacttcaactttagatgcaatactacaacgggccaaggtcaccttagcttcacggccgccaacaacgttagttacagagtcattcg |
400 |
Q |
| |
|
||| |||| || |||||||||||||||||||||| | ||||| ||| | ||||||||||| ||| ||||||||||||||||| ||| ||| | |
|
|
| T |
2207 |
gtgcagacttcacatacttcaactttagatgcaacatctcaacg------ggtaaacttagcttcaccgccaacaacaacgttagttacaaagttattag |
2114 |
T |
|
| Q |
401 |
tgttgatcaaagtagaagaaagtttacccttcaaaatcaggattattcctt--tacta-gttgtgatgaaggatctaaacggacaggaagtctgaacgtt |
497 |
Q |
| |
|
||| || | |||| ||||| |||||| || | ||| || || |||| || || | ||||| ||||||||||||| || ||| | | |||| ||| |
|
|
| T |
2113 |
tgtagacccaagttcaagaacatttaccatttataatgagcataattctttcaaacaatattgtgctgaaggatctaaatagaaaggcaatttgaaggtt |
2014 |
T |
|
| Q |
498 |
tctttaccgtttcgcatgaccagtgacgatacgtgctctgaacaacttgtagttagttgggaaccaccttctgaacccatctgtaataactctgttgatt |
597 |
Q |
| |
|
| | ||||||| | | ||| |||| || | |||||||||||| | | |||||||||||| |||||||| |||| | | ||| |||||| |||||||| |
|
|
| T |
2013 |
ttctcaccgttttactttgccaatgacaatccatgctctgaacaagtggaagttagttgggatccaccttccgaactcgtttgtgataactttgttgatt |
1914 |
T |
|
| Q |
598 |
gccatggctggaaacattctacctgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcga |
673 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
1913 |
tctatggttggaaacattctacctgtagtaaaggaaacaagtgtctttgcaatgcaaagtataaatggagtggcga |
1838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 2617 - 2485
Alignment:
| Q |
12 |
cttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaatt |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
2617 |
cttcaaattgttggatctggacacaaagtttaactactcttaaagaagagtatactaattgggattatgatcgtagactcattgtcctagttgataaatc |
2518 |
T |
|
| Q |
112 |
agacataggtatgcatatgatggttaaattaga |
144 |
Q |
| |
|
||| ||||||||||| ||||| |||||||||| |
|
|
| T |
2517 |
agaggtaggtatgcatgtgatgattaaattaga |
2485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University