View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5012-Insertion-6 (Length: 745)
Name: NF5012-Insertion-6
Description: NF5012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5012-Insertion-6 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 8 - 745
Target Start/End: Original strand, 23177706 - 23178443
Alignment:
| Q |
8 |
ttaaatcctctatcgccacagtctgcacaaatggtgcataattttatatttccaactatattgacagtataagcagagaaaagactagaagcatgctaag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23177706 |
ttaaatcctctatcgccacagtctgcacaaatggtgcataattttatatttccaactatatggacagtataagcagagaaaagactagaagcatgctaag |
23177805 |
T |
|
| Q |
108 |
ttgaacagagtacggtccacggtcttactaagcaacccaccgaaattgaacagtaaacccgaaaagagaaacctgggggttagagcactataaataagag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23177806 |
ttgaacagagtacggtccacggtcttactaagcaatccaccgaaattgaacagtaaacccgaaaagagaaacctgggggttagagcactataaataagag |
23177905 |
T |
|
| Q |
208 |
gtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcaggaagtctatatattgcacatctga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23177906 |
gtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcaggaagtctatatattgcacatctga |
23178005 |
T |
|
| Q |
308 |
gcaccagtacagtacatacaaaaaaataataaattacatcacttgatttaaagttctnnnnnnnnnnnnnntttacatcacttgatttaaagttcttatt |
407 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23178006 |
gcaccagtacagtacatacaaaaaa-taataaattacatcacttgatttaaagttctaaaaaaaataaaaatttacatcacttgatttaaagttcttatt |
23178104 |
T |
|
| Q |
408 |
atattatactccgcattgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggagggcaaggttctcca |
507 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23178105 |
atattatactctgcattgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggagggcaaggttctcca |
23178204 |
T |
|
| Q |
508 |
tcacagaaggatatgtaaccattcattccaccactgcatgtatc-ataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataaatag |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23178205 |
tcacagaaggatatgtaaccattcattccaccactgcatgtatccataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataaatag |
23178304 |
T |
|
| Q |
607 |
aatatatgatgtatacttggacgataaaaaacatgccattctgcttgtccagagtttggaaaaataaacacccaccgtcaaaggtttcaaaactattggt |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23178305 |
aatatatgatgtatacttggacgataaaaaacatgccattctgcttgtccagagtttggaaaaataaacacccaccgtcaaaggtttcaaaactattggt |
23178404 |
T |
|
| Q |
707 |
tttttacttcccaattaacacaatcctcatcaaaagatt |
745 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23178405 |
tttttacttcccaattaacacaatcctcatcaaaagatt |
23178443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 380 - 620
Target Start/End: Original strand, 23890924 - 23891165
Alignment:
| Q |
380 |
ttacatcacttgatttaaagttcttattatattatactccgcattgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtga |
479 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23890924 |
ttacatcacttgattttaagttcttattatattatactccgcattgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtga |
23891023 |
T |
|
| Q |
480 |
cctgaagaaaggagggcaaggttctccatcacagaaggatatgtaaccattcattccaccactgcatgtat-cataaataacatgagaaaatagtcgagc |
578 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
23891024 |
cctgaagaaaggacggcaaggttctccatcacagaaggatatgtaaccattcattccaccactgcatgtatccataaatatcatcagaaaatagtcgagc |
23891123 |
T |
|
| Q |
579 |
aagatcttcattttgtcattataaatagaatatatgatgtat |
620 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
23891124 |
aagatcttaattttgtcattataaataggatatatgatgtat |
23891165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 161 - 364
Target Start/End: Original strand, 23890743 - 23890947
Alignment:
| Q |
161 |
taaacccgaaaagagaaacctggggg--ttagagcactataaataagaggtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggt |
258 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23890743 |
taaacccgaaaagagaaacatgggagagttagagcactataaataagaggtcggtagagagtttaataccttttttggaaatttaactccatgtagtggt |
23890842 |
T |
|
| Q |
259 |
cggttaatatgttcatgcgcatcaggaagtctatatattgcacatctgagcaccagtacagtacatacaaaaaaataataaattacatcacttgatttaa |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| |||||||| | ||||||||||||||||||| | |
|
|
| T |
23890843 |
cggttaatatgttcatgcgcatcaggaagtctatatattgcacatctgaggtcaagtatagtacata-aaaaaaattaaaaattacatcacttgatttta |
23890941 |
T |
|
| Q |
359 |
agttct |
364 |
Q |
| |
|
|||||| |
|
|
| T |
23890942 |
agttct |
23890947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 23890695 - 23890732
Alignment:
| Q |
8 |
ttaaatcctctatcgccacagtctgcacaaatggtgca |
45 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23890695 |
ttaaatcctctatcgccacagtctgcataaatggtgca |
23890732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 428 - 602
Target Start/End: Complemental strand, 7868891 - 7868716
Alignment:
| Q |
428 |
aaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggagggcaaggttctccatcacagaaggatatgtaacc |
527 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
7868891 |
aaacttacatgacatgattatccatgatgtcttccatgcctgcaataggggacctgaagatgggagggcaaggttctccactacataaggatatgtaacc |
7868792 |
T |
|
| Q |
528 |
attcattccaccactgcatgtat-cataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataa |
602 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| ||||| || |||||||||||||| | |||| |||||||| |
|
|
| T |
7868791 |
attcattccaccactgcatgtatccctaaataacatcagaaagtaatcgagcaagatcttaaatttgccattataa |
7868716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 186 - 315
Target Start/End: Complemental strand, 7869182 - 7869053
Alignment:
| Q |
186 |
gttagagcactataaataagaggtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcagga |
285 |
Q |
| |
|
||||||||||||| |||||| | ||||||||| ||||||||||| |||||||| |||||||||||| ||||||| ||||||||||| ||||| ||| |
|
|
| T |
7869182 |
gttagagcactattaataagcagcaggtagaaaatttaataccttctttggaaacttaactccatgtggtggtcgagctatatgttcatgtgcatctgga |
7869083 |
T |
|
| Q |
286 |
agtctatatattgcacatctgagcaccagt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7869082 |
agtctatatattgcacatctgagcaccagt |
7869053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University