View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5012-Insertion-7 (Length: 642)
Name: NF5012-Insertion-7
Description: NF5012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5012-Insertion-7 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 436 - 642
Target Start/End: Complemental strand, 41033652 - 41033446
Alignment:
| Q |
436 |
tattcataaacactcatacttctttatttatatctctacgtttctgttatatttgtcgatgtgggatgtttaattatacacttcaaagacaaagttttct |
535 |
Q |
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| T |
41033652 |
tattcattaagactcatacttctttatttatatctctacgtttctgttatatttgtcgatgtgggatgtttaattatacacttcaaagacaaagttttct |
41033553 |
T |
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| Q |
536 |
tgtataggagaagaaaagcaccagtcaagaccaaagaagcatttttcaattttcacgagtgagccaaaagtaaagaacagttctcacacaatcagggctt |
635 |
Q |
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| T |
41033552 |
tgtataggagaagaaaagcaccagtcaagaccaaagaagcatttttcaattttcacgagtgagccaaaagtaaagaacagttctcacacactcagagctt |
41033453 |
T |
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| Q |
636 |
cactccc |
642 |
Q |
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| T |
41033452 |
cactccc |
41033446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 41034176 - 41033975
Alignment:
| Q |
8 |
aattataggatagaacaattcttgattagagtgtatttacttcattgcagaaattcgaatcatcatagctcattttccctaagaacgagagggttgagaa |
107 |
Q |
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| T |
41034176 |
aattataggatagaacaattcttgattagagtgtatttgcttcattgcagaaattcgaatcatcatagctcattttccctaaggacgagagggttgagaa |
41034077 |
T |
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| Q |
108 |
aatatatattaacattgaggagagtcctatctatct------------tactgcttatatactgttgctaacttattaagataatgtttggttaaggaat |
195 |
Q |
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| T |
41034076 |
aatatatattaacattgaggagagtcctatctatcttactatctatcttactgcttatatactgttgctaacttattaagataatgtttggttaaggaat |
41033977 |
T |
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| Q |
196 |
gg |
197 |
Q |
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| T |
41033976 |
gg |
41033975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 480 - 614
Target Start/End: Complemental strand, 41040244 - 41040108
Alignment:
| Q |
480 |
tgttatatttgtcgatgtgggatgtttaattatacacttcaaagacaaagttttct--tgtataggagaagaaaagcaccagtcaagaccaaagaagcat |
577 |
Q |
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| T |
41040244 |
tgttatagttgtccatgtgggacgtttagttatacactcatgagaaaaggttttctcttgtataggagaagaaaaacactagggaagaccaaagaagcat |
41040145 |
T |
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| Q |
578 |
ttttcaattttcacgagtgagccaaaagtaaagaaca |
614 |
Q |
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| T |
41040144 |
ttttcaattttcacgaatgagccaaaagtaaagaaca |
41040108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 300
Target Start/End: Complemental strand, 41033691 - 41033649
Alignment:
| Q |
258 |
tcgacatgtatttaagtaacaagttgtcaaaaaatcatatatt |
300 |
Q |
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| T |
41033691 |
tcgacatatatttaagtaacaagttgtcaaaaaatcatatatt |
41033649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 43616056 - 43616109
Alignment:
| Q |
294 |
atatatttagaggaactaaaaactcgaaggaggaaaaataaaataattagtagt |
347 |
Q |
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| T |
43616056 |
atatatttagaggaactaaaaactcaaaagaggaaaaaaataataattaatagt |
43616109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 41030034 - 41029996
Alignment:
| Q |
114 |
tattaacattgaggagagtcctatctatcttactgctta |
152 |
Q |
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| T |
41030034 |
tattagcattgaggagagtcctatctatcttacagctta |
41029996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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