View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5012-Insertion-9 (Length: 138)

Name: NF5012-Insertion-9
Description: NF5012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5012-Insertion-9
NF5012-Insertion-9
[»] scaffold1652 (3 HSPs)
scaffold1652 (8-138)||(132-262)
scaffold1652 (60-124)||(265-329)
scaffold1652 (59-124)||(342-407)
[»] scaffold0902 (2 HSPs)
scaffold0902 (8-122)||(3563-3677)
scaffold0902 (60-124)||(3468-3532)
[»] chr6 (6 HSPs)
chr6 (8-138)||(14317005-14317135)
chr6 (60-138)||(14248443-14248521)
chr6 (34-124)||(14351646-14351736)
chr6 (48-124)||(14248379-14248455)
chr6 (53-123)||(14316942-14317012)
chr6 (8-51)||(14248518-14248561)
[»] scaffold1176 (2 HSPs)
scaffold1176 (48-124)||(112-188)
scaffold1176 (59-138)||(45-124)
[»] scaffold0002 (2 HSPs)
scaffold0002 (60-138)||(165205-165283)
scaffold0002 (48-124)||(165271-165347)
[»] chr4 (2 HSPs)
chr4 (46-124)||(37245116-37245194)
chr4 (59-121)||(37242102-37242164)


Alignment Details
Target: scaffold1652 (Bit Score: 107; Significance: 5e-54; HSPs: 3)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 132 - 262
Alignment:
Q  8 aatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgatgctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcac 107  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| ||    
T  132 aatagtgctccctcttctttaacgactgcttcatctggttctcccgctgctgctcctgctgtctctccatcgtcgatctctactcctccatctcaagtac 231  T
Q  108 catcgcctacgatttcttctcctcctgctgc 138  Q
    |||||||||||||||||||||||||||||||    
T  232 catcgcctacgatttcttctcctcctgctgc 262  T

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Target: scaffold1652; HSP #2
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 265 - 329
Alignment:
Q  60 ctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttct 124  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  265 ctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctacgatttct 329  T

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Target: scaffold1652; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 342 - 407
Alignment:
Q  59 gctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttct 124  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  342 gctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccatagcctgcgatttct 407  T

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Target: scaffold0902 (Bit Score: 83; Significance: 1e-39; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 3677 - 3563
Alignment:
Q  8 aatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgatgctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcac 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||  |||||| |||||||||    
T  3677 aatagtgctccctcttcttcaccaactgcttcatctggttctcccgctgctgctcctgctgtcactccatcgtcgatctctatccctccaactcaagcac 3578  T
Q  108 catcgcctacgattt 122  Q
    |||||||||| ||||    
T  3577 catcgcctacaattt 3563  T

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Target: scaffold0902; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 3532 - 3468
Alignment:
Q  60 ctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttct 124  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  3532 ctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttct 3468  T

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Target: chr6 (Bit Score: 63; Significance: 9e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 14317135 - 14317005
Alignment:
Q  8 aatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgatgctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcac 107  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||| ||||  ||||||| |||||||||||| | ||| ||||| || |||||||||| ||    
T  14317135 aatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgcagctcctgttgtcgctccatcatggatctctaccccaccatctcaaggac 14317036  T
Q  108 catcgcctacgatttcttctcctcctgctgc 138  Q
    |||||||||| |||||| || || |||||||    
T  14317035 catcgcctactatttctccttctgctgctgc 14317005  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 14248521 - 14248443
Alignment:
Q  60 ctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttcttctcctcctgctgc 138  Q
    ||||||||||||||||||| | ||| ||||| ||||||||||||| |||||||||||| |||||| ||||| |||||||    
T  14248521 ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgc 14248443  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 14351736 - 14351646
Alignment:
Q  34 tgcttcatctggttctcccgctgatgctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttct 124  Q
    |||||| | ||||||||||||||  |||||||||||  ||||||| ||  | |||||||| ||||||||||||||||||||||||||||||    
T  14351736 tgcttcctttggttctcccgctgtcgctcctgctgttactccatcatcagtctctactccaccatctcaagcaccatcgcctacgatttct 14351646  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 14248455 - 14248379
Alignment:
Q  48 ctcccgctgatgctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttct 124  Q
    |||| |||| ||||||||||||  |||||| |||||| ||||||||||||||||||| |||||||||| ||||||||    
T  14248455 ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttct 14248379  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 14317012 - 14316942
Alignment:
Q  53 gctgatgctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttc 123  Q
    |||| |||||||| |||  ||||||| ||||| ||||||||||| ||||||||||| |||||| |||||||    
T  14317012 gctgctgctcctgatgtgactccatcatcgatctctactcctccgtctcaagcaccctcgcctgcgatttc 14316942  T

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Target: chr6; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 14248561 - 14248518
Alignment:
Q  8 aatagtgctccctcttcttcaccgactgcttcatctggttctcc 51  Q
    ||||||||||||||| |||||||| ||||||  |||||||||||    
T  14248561 aatagtgctccctctccttcaccgtctgctttctctggttctcc 14248518  T

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Target: scaffold1176 (Bit Score: 49; Significance: 2e-19; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 112 - 188
Alignment:
Q  48 ctcccgctgatgctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttct 124  Q
    |||| |||| ||||||||||||  ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||    
T  112 ctcctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttct 188  T

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Target: scaffold1176; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 45 - 124
Alignment:
Q  59 gctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttcttctcctcctgctgc 138  Q
    ||||||| ||||| |||||| | ||| ||||| ||||||||||||| |||||||||||| |||||| ||||| |||||||    
T  45 gctcctgttgtcgatccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgc 124  T

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Target: scaffold0002 (Bit Score: 47; Significance: 3e-18; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 165205 - 165283
Alignment:
Q  60 ctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttcttctcctcctgctgc 138  Q
    ||||||||||||||||||| | ||| ||||| ||||||||||||| |||||||||||| |||||| ||||| |||||||    
T  165205 ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgc 165283  T

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Target: scaffold0002; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 165271 - 165347
Alignment:
Q  48 ctcccgctgatgctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttct 124  Q
    |||| |||| ||||||||||||  |||||| |||||| ||||||||||||||||||| |||||||||| ||||||||    
T  165271 ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttct 165347  T

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Target: chr4 (Bit Score: 43; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 37245194 - 37245116
Alignment:
Q  46 ttctcccgctgatgctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatttct 124  Q
    |||||||| ||  |||||||||||  ||||||||||||| |||||||||||||||||||||||||| ||  ||||||||    
T  37245194 ttctcccgttgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatcaccagcgatttct 37245116  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 37242164 - 37242102
Alignment:
Q  59 gctcctgctgtcgctccatcgtcgatatctactcctccatctcaagcaccatcgcctacgatt 121  Q
    |||||||| ||  |||||| |||||| || ||||||||||||||||||||||| ||| |||||    
T  37242164 gctcctgcagttactccattgtcgatctcaactcctccatctcaagcaccatcacctgcgatt 37242102  T

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