View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5012_high_2 (Length: 501)
Name: NF5012_high_2
Description: NF5012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5012_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 38750734 - 38750409
Alignment:
| Q |
12 |
cacagataaaatagtgattaacaacaatcatannnnnnn-ctcaaccatttccttcaattccataattgggaaattttctttgctacttattcttcaaag |
110 |
Q |
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| T |
38750734 |
cacagataaaatagtgattaacaacaatcatattttttttctcaaccatttccttcaattccataattgggaaattttctttgctacttattcttcaaag |
38750635 |
T |
|
| Q |
111 |
aactttcaagtaactactggaagcaacactaagagttgtatacttattgtaactcaataatttgattataaaacataaataacagtattagtgtctccca |
210 |
Q |
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| T |
38750634 |
aactttcaagtaactactggaagcaacactaagagttgtatacttattgtaactcaataatttgattataaaacataaataacagtattagtgtctccca |
38750535 |
T |
|
| Q |
211 |
aataatgcttcacaatatgattatttaaattattgatgcatataactttgaacttgttatgtttctctgatcagagcagctacatgttctcttaccctta |
310 |
Q |
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| T |
38750534 |
aataatgcttcacaaattgattatttaaattattgatgcatagaactttgaacttgttatgtttctctgatcagagcagctacatgttctcttaccctta |
38750435 |
T |
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| Q |
311 |
ttcgacaaagttgcaaaaagttctac |
336 |
Q |
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| T |
38750434 |
ttcgacaaagttgcaaatagttctac |
38750409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 486
Target Start/End: Complemental strand, 37133075 - 37132999
Alignment:
| Q |
410 |
aattgagatcatgatattggcttataggtctaactaacttatcaagtaattagcaaatccagctatatatttgtatt |
486 |
Q |
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| T |
37133075 |
aattgagatcatgatattggtccgaagacctaactaacttatcaagtaattaacaaatggagctgtatatttgtatt |
37132999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Original strand, 35142060 - 35142107
Alignment:
| Q |
340 |
attggagatgcgtagacaaacttttcctgcggaaagtacaaagggatc |
387 |
Q |
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| T |
35142060 |
attggagatgtttagacaaacttttcctgtggaaagtacaaagtgatc |
35142107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 83 - 486
Target Start/End: Original strand, 3021739 - 3022149
Alignment:
| Q |
83 |
aattttctttgctacttattcttcaaagaactttcaagtaactactggaa-------gcaacactaagagttgtatacttattgtaactcaataatttga |
175 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||| |||| |||||| | |||||||| ||||| | |||||||||| |
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| T |
3021739 |
aattttcttggctacttaatcttcaaagaactttcaagtaactactggaaaaatgaagcaatactaaggatggtatacttgttgtatcccaataatttgt |
3021838 |
T |
|
| Q |
176 |
ttataaaacataaataacagtatta---gtgtctcccaa-ataatgcttcacaatatgattatttaaattattgatgcatataactttgaacttgtt-at |
270 |
Q |
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| T |
3021839 |
ttataaaacataaataacagtattaatagtgtctcacaatataatgtttcacaaattcattatttaaattattgatacatagaaatttgaacttgtttat |
3021938 |
T |
|
| Q |
271 |
gtttctctgatcagagcagctacatgttctcttacccttattcgacaaagttgcaaaaagttctactggattggagatgcgtagacaaacttttcctgcg |
370 |
Q |
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||||||| |||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||| ||||||||||||||||| | |
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| T |
3021939 |
atttctcttatcagaatagctacatgttctcttacccttcttcaacaaagttgcaaatagttctactgga-----gatgcttagacaaacttttcctgtg |
3022033 |
T |
|
| Q |
371 |
gaaagtacaaagggatcaaattctgttgtaagatcgagtaattgagatcatgatattggcttataggtctaactaacttatcaagtaattagcaaatcca |
470 |
Q |
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||| |||||||| ||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
3022034 |
gaatgtacaaagtgatcaaattctattgtaagatcaagtaattgggatcatgatattggcttgtaggtctaattaacttatcaagtaattagcaaatcca |
3022133 |
T |
|
| Q |
471 |
gctatatatttgtatt |
486 |
Q |
| |
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||||||||||| |||| |
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|
| T |
3022134 |
gctatatatttatatt |
3022149 |
T |
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