View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5012_low_4 (Length: 301)

Name: NF5012_low_4
Description: NF5012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5012_low_4
NF5012_low_4
[»] chr5 (1 HSPs)
chr5 (22-289)||(29272801-29273069)
[»] chr6 (1 HSPs)
chr6 (22-283)||(18811986-18812251)
[»] chr7 (3 HSPs)
chr7 (35-252)||(12975179-12975409)
chr7 (22-218)||(40435222-40435418)
chr7 (241-289)||(32353777-32353824)
[»] chr4 (10 HSPs)
chr4 (22-176)||(6801137-6801292)
chr4 (89-162)||(27067189-27067262)
chr4 (89-162)||(27087902-27087975)
chr4 (221-289)||(27066242-27066310)
chr4 (224-289)||(27087345-27087410)
chr4 (172-236)||(27067128-27067192)
chr4 (172-236)||(27087841-27087905)
chr4 (22-76)||(27067262-27067316)
chr4 (22-76)||(27087975-27088029)
chr4 (241-289)||(43290708-43290755)
[»] chr8 (1 HSPs)
chr8 (22-247)||(29230036-29230262)
[»] chr3 (2 HSPs)
chr3 (26-152)||(53834775-53834900)
chr3 (33-138)||(7137953-7138056)
[»] chr1 (2 HSPs)
chr1 (22-121)||(24188921-24189019)
chr1 (168-282)||(24188807-24188922)
[»] scaffold2028 (1 HSPs)
scaffold2028 (38-80)||(796-838)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 22 - 289
Target Start/End: Complemental strand, 29273069 - 29272801
Alignment:
Q  22 gaactctcaaaattaaaatggataatgtctcaacaaattgacaaacgacttgtttttacccatatgaacatagtcttgcgaatttttcacaatctatgtt 121  Q
    |||||||||||| ||||||||||| | | |||| |||||||||| |||||||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  29273069 gaactctcaaaaataaaatggatagtctttcaaaaaattgacaagcgacttgtttttacccatatgaacatagccttgcaaatttt-cacaatctatgtt 29272971  T
Q  122 gggttaccatcactctcaatttttgtattggacataattcat-ccccttcgatgtat--atatttctcactatacagctgtatcacaaataatacattga 218  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  |||||| ||||||||||| |||||||||||||||||||| |    
T  29272970 gggttaccatcactctcaatttttgtattggacataatccatcccccttcgatgtataaatatttttcactatacagttgtatcacaaataatacattaa 29272871  T
Q  219 ttaagacgtctctcagtcaatatctcatatatattttcaaaatcatcatccatgatatattatcacaggtt 289  Q
     |||||||||||||||||| ||||||||||||||| || |||||| |||| ||||||||| |||| |||||    
T  29272870 ctaagacgtctctcagtcagtatctcatatatattatc-aaatcaacatctatgatatatcatcataggtt 29272801  T

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Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 283
Target Start/End: Original strand, 18811986 - 18812251
Alignment:
Q  22 gaactctcaaaattaaaatggataatgtctcaacaaattgacaaacgacttgtttttacccatatgaacatagtcttgcgaatttttcacaatctatgtt 121  Q
    |||||||||||||||||||||||| ||||| | |||||||||||  |||||||| ||||||||||||||||||  ||||||||||| |||||||||||||    
T  18811986 gaactctcaaaattaaaatggatagtgtctaatcaaattgacaagtgacttgttcttacccatatgaacatagctttgcgaatttt-cacaatctatgtt 18812084  T
Q  122 gggttaccatcactctcaatttttgtattggacataattcatccccttcgatg------tatatatttctcactatacagctgtatcacaaataatacat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||      |||||||| |||| ||||  | || ||||||||||||||||    
T  18812085 gggttaccatcactctcaatttttgtattggacataattcatcccccttgatgtatatatatatattactcattatattgatgcatcacaaataatacat 18812184  T
Q  216 tgattaagacgtctctcagtcaatatctcatatatattttcaaaatcatcatccatgatatattatca 283  Q
    ||| |||||||||||||||| | ||||||||||||||| || ||||||||||| ||||||||||||||    
T  18812185 tgagtaagacgtctctcagtgactatctcatatatattatc-aaatcatcatctatgatatattatca 18812251  T

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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 35 - 252
Target Start/End: Complemental strand, 12975409 - 12975179
Alignment:
Q  35 taaaatggataatgtctcaacaaattgacaaacgacttgtttttacccatatgaacatagtcttgcgaatttttcacaatctatgttgggttaccatcac 134  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||| ||  |||||||||||| |||||| ||||||||||||||||| |    
T  12975409 taaaatggatagtgtctcatcaaattgacaaacgacttgttcttaaccatatgaacgtaaccttgcgaatttt-cacaatttatgttgggttaccatcgc 12975311  T
Q  135 tctcaatttttgtattggacataattcat-ccccttcgatg--tatatatttctcactatac---agctgt--------atcacaaataatacattgatt 220  Q
    ||||||||||||||||||||||||| ||| |||||| ||||  ||||||||| |||||||||   ||||||        ||||||||||||||||||       
T  12975310 tctcaatttttgtattggacataatccatccccctttgatgtatatatatttttcactatacataagctgtatcaacaaatcacaaataatacattggcc 12975211  T
Q  221 aagacgtctctcagtcaatatctcatatatat 252  Q
    ||||||||||||||||| ||||||||||||||    
T  12975210 aagacgtctctcagtcagtatctcatatatat 12975179  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 40435418 - 40435222
Alignment:
Q  22 gaactctcaaaattaaaatggataatgtctcaacaaattgacaaacgacttgtttttacccatatgaacatagtcttgcgaatttttcacaatctatgtt 121  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||  |||| || ||||||||||||| |     ||  | ||||| |||||||||| ||    
T  40435418 gaactctcaaaaataaaatggatagtgtctcatcaaattgacaaataacttattcttacccatatgaaaagttctttatgcatttt-cacaatctatatt 40435320  T
Q  122 gggttaccatcactctcaatttttgtattggacataattcatccccttcga--tgtatatatttctcactatacagctgtatcacaaataatacattga 218  Q
    |||||| ||||||||| ||||||||||||| |||||||||||| | || ||  |||| |||||| |||||||  || ||||||||||||||||||||||    
T  40435319 gggttatcatcactcttaatttttgtattgaacataattcatctcatt-gatgtgtaaatatttttcactatggagatgtatcacaaataatacattga 40435222  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 32353777 - 32353824
Alignment:
Q  241 tctcatatatattttcaaaatcatcatccatgatatattatcacaggtt 289  Q
    ||||||||||||| |||||| |||||||||||||||||||||| |||||    
T  32353777 tctcatatatattatcaaaa-catcatccatgatatattatcataggtt 32353824  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 6801137 - 6801292
Alignment:
Q  22 gaactctcaaaattaaaatggataatgtctcaacaaattgacaaacgacttgtttttacccatatgaacatagtcttgcgaatttttcacaatctatgtt 121  Q
    ||||| |||||| ||||||||| | ||||||| ||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||    
T  6801137 gaactttcaaaaataaaatggacagtgtctcatcaaattgacaagcgacttgttcttacccatatgaacatagccttgcgaa-ttttcacaatctatgtt 6801235  T
Q  122 gggttaccatcactctcaatttttgtattggacataatt--catccccttcgatgta 176  Q
    ||||||||||||||||||||||||||||| | ||||| |  ||||||| ||||||||    
T  6801236 gggttaccatcactctcaatttttgtattaggcataagtcccatccccctcgatgta 6801292  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 27067189 - 27067262
Alignment:
Q  89 acatagtcttgcgaatttttcacaatctatgttgggttaccatcactctcaatttttgtattggacataattca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067189 acatagtcttgcgaatttttcacaatctatgttgggttaccatcactctcaatttttgtattggacataattca 27067262  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 27087902 - 27087975
Alignment:
Q  89 acatagtcttgcgaatttttcacaatctatgttgggttaccatcactctcaatttttgtattggacataattca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27087902 acatagtcttgcgaatttttcacaatctatgttgggttaccatcactctcaatttttgtattggacataattca 27087975  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 27066310 - 27066242
Alignment:
Q  221 aagacgtctctcagtcaatatctcatatatattttcaaaatcatcatccatgatatattatcacaggtt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27066310 aagacgtctctcagtcaatatctcatatatattttcaaaatcatcatccatgatatattatcacaggtt 27066242  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 27087410 - 27087345
Alignment:
Q  224 acgtctctcagtcaatatctcatatatattttcaaaatcatcatccatgatatattatcacaggtt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27087410 acgtctctcagtcaatatctcatatatattttcaaaatcatcatccatgatatattatcacaggtt 27087345  T

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Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 27067192 - 27067128
Alignment:
Q  172 atgtatatatttctcactatacagctgtatcacaaataatacattgattaagacgtctctcagtc 236  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  27067192 atgtatatatttctcactatacagctatatcacaaataatgcattgattaagacgtctctcagtc 27067128  T

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Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 27087905 - 27087841
Alignment:
Q  172 atgtatatatttctcactatacagctgtatcacaaataatacattgattaagacgtctctcagtc 236  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  27087905 atgtatatatttctcactatacagctatatcacaaataatgcattgattaagacgtctctcagtc 27087841  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 27067316 - 27067262
Alignment:
Q  22 gaactctcaaaattaaaatggataatgtctcaacaaattgacaaacgacttgttt 76  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||    
T  27067316 gaactctaaaaattaaaatggataatgtctcaacaaattgacaagcaacttgttt 27067262  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 27088029 - 27087975
Alignment:
Q  22 gaactctcaaaattaaaatggataatgtctcaacaaattgacaaacgacttgttt 76  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||    
T  27088029 gaactctaaaaattaaaatggataatgtctcaacaaattgacaagcaacttgttt 27087975  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 43290755 - 43290708
Alignment:
Q  241 tctcatatatattttcaaaatcatcatccatgatatattatcacaggtt 289  Q
    |||||| |||||| |||||| |||||||||||||||||||||| |||||    
T  43290755 tctcatgtatattatcaaaa-catcatccatgatatattatcataggtt 43290708  T

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Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 29230036 - 29230262
Alignment:
Q  22 gaactctca-aaattaaaatggataatgtctcaacaaattgacaaacgacttgtttttacccatatgaacatagtcttgcgaatttttcacaatctatgt 120  Q
    ||||||||| ||| ||| ||||||| ||||||| |||| |||||| ||||||||| ||||||||||||||||||  |||| |||||| ||||||||||||    
T  29230036 gaactctcataaaataatatggatagtgtctcatcaaaatgacaagcgacttgttcttacccatatgaacatagcgttgctaatttt-cacaatctatgt 29230134  T
Q  121 tgggttaccatcactctcaatttttgtattggacataattcatcccc-ttcgatgtatatatttct--cactatacagctgtatcacaaataatacattg 217  Q
    || |||||||||||||||||||||| |  |||||||||| ||||||| |||||||||||||| | |  || | |||| ||| ||||||||||||||||||    
T  29230135 tgtgttaccatcactctcaattttttt--tggacataatccatcccccttcgatgtatatatattttccattgtacaactgcatcacaaataatacattg 29230232  T
Q  218 attaagacgtctctcagtcaatatctcata 247  Q
    |  ||||||||| ||||||| |||| ||||    
T  29230233 accaagacgtctatcagtcactatcccata 29230262  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 53834775 - 53834900
Alignment:
Q  26 tctcaaaattaaaatggataatgtctcaacaaattgacaaacgacttgtttttacccatatgaacatagtcttgcgaatttttcacaatctatgttgggt 125  Q
    |||||||| ||||||||||||||| ||| |||||||||||| |||||||| |||||| |||||||||| |||||| || |||||||||| ||||||||||    
T  53834775 tctcaaaaataaaatggataatgtttcatcaaattgacaaatgacttgttcttacccttatgaacataatcttgc-aaattttcacaatttatgttgggt 53834873  T
Q  126 taccatcactctcaatttttgtattgg 152  Q
    |||||||||||||||||||||||||||    
T  53834874 taccatcactctcaatttttgtattgg 53834900  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 7137953 - 7138056
Alignment:
Q  33 attaaaatggataatgtctcaacaaattgacaaacgacttgtttttacccatatgaacatagtcttgcgaatttttcacaatctatgttgggttaccatc 132  Q
    ||||||||||||| ||||||||| |||| ||||  ||| |||| |||||||||||||||||  |||| | |||||||||||| |||||||||||||| ||    
T  7137953 attaaaatggatagtgtctcaacgaattaacaagtgacctgttcttacccatatgaacata-ccttgtg-atttttcacaatttatgttgggttaccgtc 7138050  T
Q  133 actctc 138  Q
    ||||||    
T  7138051 actctc 7138056  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 24189019 - 24188921
Alignment:
Q  22 gaactctcaaaattaaaatggataatgtctcaacaaattgacaaacgacttgtttttacccatatgaacatagtcttgcgaatttttcacaatctatgtt 121  Q
    ||||||||||||| |||||||||| |||||||||||||||||||  |||||||| |||||||||| ||||||| ||||  || |||||||||||||||||    
T  24189019 gaactctcaaaataaaaatggatagtgtctcaacaaattgacaagtgacttgttcttacccatataaacatagccttg-taaattttcacaatctatgtt 24188921  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 282
Target Start/End: Complemental strand, 24188922 - 24188807
Alignment:
Q  168 ttcgatgtatatat--ttctcactatacagctgtatcacaaataatacattgattaagacgtctctcagtcaatatctcatatatattttcaaaatcatc 265  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||||||  |||||||||||| |||| |||| |||||||||| ||  ||||| |    
T  24188922 ttcgatgtatatatacttctcactgtacagctgtatcacaaataatacattgaccaagacgtctctcggtcagtatcacatatatattatc-gaatcaac 24188824  T
Q  266 atccatgatatattatc 282  Q
    ||  |||||||||||||    
T  24188823 atttatgatatattatc 24188807  T

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Target: scaffold2028 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2028
Description:

Target: scaffold2028; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 796 - 838
Alignment:
Q  38 aatggataatgtctcaacaaattgacaaacgacttgtttttac 80  Q
    |||||||| |||||||||||||||||||  |||||||||||||    
T  796 aatggatagtgtctcaacaaattgacaagtgacttgtttttac 838  T

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