View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5013-Insertion-1 (Length: 895)

Name: NF5013-Insertion-1
Description: NF5013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5013-Insertion-1
NF5013-Insertion-1
[»] chr4 (22 HSPs)
chr4 (618-895)||(37245858-37246136)
chr4 (618-884)||(32577066-32577331)
chr4 (622-895)||(29655672-29655945)
chr4 (618-895)||(28537793-28538069)
chr4 (618-883)||(21321430-21321697)
chr4 (618-895)||(18442153-18442429)
chr4 (618-895)||(49951216-49951494)
chr4 (619-895)||(51259535-51259813)
chr4 (618-871)||(56065532-56065785)
chr4 (618-884)||(28426099-28426352)
chr4 (618-895)||(41835317-41835595)
chr4 (618-884)||(49119418-49119671)
chr4 (618-895)||(51734978-51735255)
chr4 (618-895)||(55734912-55735190)
chr4 (625-895)||(43840312-43840584)
chr4 (618-895)||(2064756-2065034)
chr4 (742-884)||(26422620-26422762)
chr4 (739-895)||(47226336-47226493)
chr4 (174-231)||(53357293-53357350)
chr4 (808-895)||(24989940-24990027)
chr4 (258-322)||(53354743-53354807)
chr4 (336-378)||(53354672-53354714)
[»] chr5 (20 HSPs)
chr5 (618-884)||(22767275-22767541)
chr5 (621-887)||(8387992-8388258)
chr5 (618-895)||(27292337-27292615)
chr5 (618-895)||(4268002-4268280)
chr5 (618-895)||(20204858-20205136)
chr5 (622-887)||(27532921-27533187)
chr5 (618-895)||(26597463-26597741)
chr5 (618-895)||(41940743-41941021)
chr5 (618-895)||(12660219-12660497)
chr5 (618-895)||(25730711-25730989)
chr5 (648-895)||(34652260-34652507)
chr5 (626-895)||(15988755-15989025)
chr5 (619-871)||(11375544-11375796)
chr5 (618-820)||(37448028-37448230)
chr5 (465-613)||(26031480-26031626)
chr5 (626-713)||(30222988-30223075)
chr5 (746-883)||(32632546-32632683)
chr5 (551-603)||(36855265-36855318)
chr5 (544-603)||(10240701-10240761)
chr5 (417-450)||(36855354-36855387)
[»] chr8 (13 HSPs)
chr8 (622-883)||(7127130-7127391)
chr8 (622-883)||(8451142-8451403)
chr8 (618-895)||(23853835-23854113)
chr8 (622-871)||(478087-478336)
chr8 (649-895)||(185597-185842)
chr8 (618-887)||(13414926-13415195)
chr8 (692-887)||(40588745-40588940)
chr8 (626-895)||(37711990-37712254)
chr8 (767-895)||(3606745-3606874)
chr8 (730-821)||(9496797-9496887)
chr8 (410-450)||(7888558-7888598)
chr8 (786-895)||(11870335-11870445)
chr8 (802-855)||(598284-598337)
[»] chr7 (18 HSPs)
chr7 (622-884)||(9328620-9328881)
chr7 (618-895)||(16731836-16732114)
chr7 (618-895)||(17709970-17710248)
chr7 (618-895)||(22289144-22289422)
chr7 (618-895)||(16098393-16098671)
chr7 (618-887)||(30493625-30493893)
chr7 (651-895)||(29200961-29201208)
chr7 (618-871)||(1581518-1581772)
chr7 (619-824)||(17877312-17877517)
chr7 (763-887)||(3275082-3275206)
chr7 (805-895)||(3601742-3601833)
chr7 (656-820)||(30824557-30824720)
chr7 (642-743)||(34578437-34578538)
chr7 (829-895)||(24139145-24139212)
chr7 (808-887)||(44480893-44480972)
chr7 (393-450)||(20878260-20878316)
chr7 (393-450)||(28031464-28031520)
chr7 (467-508)||(31446949-31446990)
[»] chr1 (18 HSPs)
chr1 (618-895)||(25682554-25682832)
chr1 (618-895)||(44527156-44527434)
chr1 (618-895)||(48949730-48950008)
chr1 (618-895)||(51113218-51113496)
chr1 (623-895)||(36733604-36733877)
chr1 (635-887)||(48166157-48166409)
chr1 (618-887)||(4395062-4395330)
chr1 (622-895)||(52109361-52109634)
chr1 (618-895)||(5609242-5609520)
chr1 (729-895)||(44602766-44602933)
chr1 (618-866)||(16816836-16817083)
chr1 (619-749)||(24538414-24538544)
chr1 (805-895)||(2885313-2885404)
chr1 (468-618)||(22572109-22572257)
chr1 (392-450)||(8904841-8904899)
chr1 (817-895)||(21031251-21031330)
chr1 (544-596)||(8904759-8904812)
chr1 (385-450)||(14615076-14615140)
[»] chr3 (19 HSPs)
chr3 (649-887)||(42340292-42340530)
chr3 (618-895)||(53496935-53497213)
chr3 (618-895)||(55199414-55199692)
chr3 (618-895)||(46007204-46007480)
chr3 (628-806)||(647307-647485)
chr3 (760-871)||(647194-647305)
chr3 (729-895)||(11020186-11020353)
chr3 (806-895)||(27608909-27608999)
chr3 (778-871)||(24176833-24176926)
chr3 (646-767)||(27941129-27941250)
chr3 (806-887)||(34497387-34497468)
chr3 (621-851)||(48227319-48227550)
chr3 (619-790)||(2615397-2615568)
chr3 (763-895)||(2121129-2121262)
chr3 (838-887)||(19117735-19117784)
chr3 (802-887)||(31341740-31341829)
chr3 (396-451)||(33633710-33633765)
chr3 (833-887)||(27747700-27747754)
chr3 (830-883)||(2615598-2615651)
[»] chr2 (15 HSPs)
chr2 (618-887)||(88462-88731)
chr2 (637-895)||(34695910-34696167)
chr2 (637-895)||(34718322-34718579)
chr2 (650-856)||(44017364-44017570)
chr2 (618-887)||(12130653-12130922)
chr2 (618-818)||(18345571-18345770)
chr2 (729-895)||(1417987-1418154)
chr2 (696-799)||(9709910-9710013)
chr2 (659-895)||(26198637-26198863)
chr2 (784-887)||(13109884-13109987)
chr2 (781-895)||(22845602-22845717)
chr2 (796-854)||(9710036-9710094)
chr2 (761-871)||(14827126-14827236)
chr2 (466-525)||(6298926-6298985)
chr2 (551-597)||(11673478-11673525)
[»] chr6 (10 HSPs)
chr6 (618-876)||(15606020-15606278)
chr6 (635-895)||(28107059-28107320)
chr6 (708-883)||(19690898-19691073)
chr6 (692-895)||(30801997-30802201)
chr6 (618-895)||(14680062-14680343)
chr6 (647-885)||(15053192-15053430)
chr6 (660-871)||(29368087-29368296)
chr6 (695-868)||(11731703-11731873)
chr6 (829-887)||(34104480-34104538)
chr6 (829-895)||(27443045-27443111)
[»] scaffold0446 (1 HSPs)
scaffold0446 (618-871)||(89-342)
[»] scaffold0003 (1 HSPs)
scaffold0003 (829-895)||(44250-44316)
[»] scaffold1175 (1 HSPs)
scaffold1175 (826-887)||(489-550)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 2e-98; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 618 - 895
Target Start/End: Complemental strand, 37246136 - 37245858
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| |||||||| ||||||||| | ||||||||| | ||||||||| |||||||||||||| ||| ||||||||| ||| ||||| |||    
T  37246136 gtgcaatgtggatgccgcgttccatgaccgtaatcgtcttacatcctctgcatgttgtgttagagactcccgagggaaatttattcgggcacaaacgaaa 37246037  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    |||||||||  |||||||||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  37246036 tggaaacgggcaaatatgacagttttggagggggaggcagtagccttactcgatgctattcactttgcttatgtgaacagatgggaccgggttgtcttcg 37245937  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| |||||||||    
T  37245936 agtctgactctgctactttagtgcaagctctttcgtctctgggccatggtgattcagaattctatgctattgtttctag 37245858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 618 - 884
Target Start/End: Complemental strand, 32577331 - 32577066
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||||||||||  ||||||| ||||| ||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||| ||||||||| |||    
T  32577331 gtgcaatgtggatgctgcgttccatgaccttaaccatcttacatcttttgcgtgttgtgttagagattcccgggg-caatttattcgggctcaaacgaaa 32577233  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| |||||  ||||||||| |||||||||||||||| | | |||||||||| ||||||| | ||||||||||| |||| ||||||| ||||||||||||    
T  32577232 tggcaacgggcaaatatgactgttttggagggggaggtactagccttactcgctgctatttactttgctgatgtaaacatatgggactgggttgtcttcg 32577133  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgc 884  Q
    ||||||| ||||||||| |||||||||||| ||||||   ||| |||||||||| |||||| |||||    
T  32577132 agtctgactctgctactctagtgcaagctcaatcgtcagcgggacatggtgattcagaattctatgc 32577066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 622 - 895
Target Start/End: Complemental strand, 29655945 - 29655672
Alignment:
Q  622 aatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatgga 721  Q
    |||||||||| |||||||| ||| ||||||| ||||||||||||||  ||||| ||||||| |||||| ||||||||||||| ||||||||||||||||     
T  29655945 aatgtggatgccgcgttccatgatcgtaaccctcttacatcttttgt-tgttgtgttagaggctcccgtgggcaatttattcgggctcaaacaaaatggc 29655847  T
Q  722 aacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtc 821  Q
    | |||  ||||||||| ||||||||||| |||||| | |||||||||||||  ||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  29655846 agcgggcaaatatgactgttttggagggagaggcagtagccttactcgatgtcattcactttgctgatgtgaacagatggaaccgtgttgtcttcgagtc 29655747  T
Q  822 tgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    ||| |  |||||| |||||||||||||||| |||  |||||||||||||| |||||| |||| || |||||||||    
T  29655746 tgactacgctactctagtgcaagctctatcatcttcgggccatggtgattcagaattctatgttattgtttctag 29655672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 618 - 895
Target Start/End: Complemental strand, 28538069 - 28537793
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||||||||||  ||||||| ||| ||||||||| |||||| |||||| ||||| |||||||||||||  ||||||||||||| ||||||||| |||    
T  28538069 gtgcaatgtggatgctgcgttccatgatcgtaaccatattacatattttgcgtgttgtgttagagactcccacgggcaatttattcgggctcaaacgaaa 28537970  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | ||| ||||||||| |||||  |||||||||||| | ||||||||||| ||  |||| |||| ||||| ||||||||||||||||||||| |||     
T  28537969 tggcagcgggaaaatatgatagttt--gagggggaggcagtagccttactcgaggcccttcactttgttgatgcgaacagatgggaccgggttgtgttca 28537872  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  |||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||||    
T  28537871 agtccgactcatctactttagtgcaagctctatcgtctctgggccatggtgattcaaaattctatgctattgtttctag 28537793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 618 - 883
Target Start/End: Original strand, 21321430 - 21321697
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||| |||||||||||||  |||||||||| || ||| ||||||||| ||||||||| |||    
T  21321430 gtgcaatgtggatgttgcgttccatgaccgtaaccatattacaacttttgcatgttgtattagagactctcgcgggaaatttattcgggctcaaacgaaa 21321529  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| |||||  ||||||||||||||||||||||||| |||| ||||||||||| ||  |||| ||| ||||||  |||||||||||||||||||||||||    
T  21321530 tggcaacgggcaaatatgacagttttggagggggagacaatagccttactcgaggcccttcacttttctgatgctaacagatgggaccgggttgtcttcg 21321629  T
Q  818 agtctgattctgctactttagtgcaa--gctctatcgtctctgggccatggtgatttagaattttatg 883  Q
    |||| || ||  ||||| ||||||||  ||||||| ||||| ||| |||||||||| |||||| ||||    
T  21321630 agtccgactcatctactctagtgcaattgctctattgtctcagggtcatggtgattcagaattctatg 21321697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 618 - 895
Target Start/End: Complemental strand, 18442429 - 18442153
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||| |||||||||||||| |||||| |||||| ||||| ||||||| ||||| |||||||||||||  ||||||||||||| ||||||||| |||    
T  18442429 gtgcaatgcggatgtcgcgttccatgaccgcaaccatattacaacttttgcgtgttgtgttagagactcccatgggcaatttattcgggctcaaacgaaa 18442330  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||||| ||| ||||||||||||| ||||||||||||||| | ||||||||||| ||  | || ||||||| || |||||||||| |||||||| | ||||    
T  18442329 tggaagcgggaaaatatgacagtattggagggggaggcagtagccttactcgaggccctacactttgctgttgcgaacagatggaaccgggttattttcg 18442230  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||  || ||  ||||  ||||||||||| |||||||| ||| ||||||||||| |||||| ||||||| |||||||||    
T  18442229 agtgcgactcatctac--tagtgcaagctatatcgtctttggcccatggtgattcagaattctatgctattgtttctag 18442153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 49951216 - 49951494
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| ||| |||| |||||| |||||| |||||||||||||||| || |||||||| || || || |||||||||| ||||||||| |||    
T  49951216 gtgcaatgtggatgccgcattccatgaccgcaaccatattacatcttttgcatgctgtgttagagattctcgcggccaatttattcgggctcaaacgaaa 49951315  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | |||  |||||||||||| ||||||||||||||| | ||||||||||| ||  |||| |||||||||| |||||||||| |||| ||||||||||    
T  49951316 tggcagcgggcaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaacagatggaaccgagttgtcttcg 49951415  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  ||||| ||||||||||| |||| |||  ||||| |||||||| |||||| | ||||| |||||||||    
T  49951416 agtccgactcgtctactctagtgcaagctttatcatcttcgggccgtggtgattcagaattctctgctattgtttctag 49951494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 619 - 895
Target Start/End: Complemental strand, 51259813 - 51259535
Alignment:
Q  619 tgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaat 718  Q
    ||||||||||||| |||||| | ||||||| | ||| |||||||||| | |||||| ||||||||||| || |||||||| |||| ||||||||| ||||    
T  51259813 tgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgtatgttgtgttagagactctcgtgggcaattcattcgggctcaaacgaaat 51259714  T
Q  719 ggaaacggaaaaatatgacagttttggaggggg-aggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    || ||||   ||||||||||||||||||||||| ||||| | |||||||||||||  ||||| ||||||| || || ||| | ||||| |||||||||||    
T  51259713 ggcaacgagcaaatatgacagttttggaggggggaggcagttgccttactcgatgtcattcactttgctgttgggatcagttcggaccaggttgtcttcg 51259614  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || || |||||| |||||||||| |||||||||  |||||||||||||| ||||||||||| || |||||||||    
T  51259613 agtccgactcagctactctagtgcaagcgctatcgtcttcgggccatggtgattcagaattttatgttattgtttctag 51259535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 618 - 871
Target Start/End: Original strand, 56065532 - 56065785
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||||||||||||| ||| | ||||||| | ||| |||||||||| || |||||  ||||||||||||| |||||||| |||| ||||||||| |||    
T  56065532 gtgcaatgtggatgtcgtgtttcatgaccgtcaacatattacatctttcgcgtgttgttttagagactcccgtgggcaattcattcgggctcaaacgaaa 56065631  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||  ||||   |||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||| || ||| | ||||||||||||||||||||    
T  56065632 tgacaacgagcaaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgctgttgggaatatatgggaccgggttgtcttcg 56065731  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatt 871  Q
    |||| || || |||||| |||||||||| ||||| ||||  | |||||||||||    
T  56065732 agtccgactcagctactctagtgcaagcgctatcatctccagaccatggtgatt 56065785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 618 - 884
Target Start/End: Original strand, 28426099 - 28426352
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||| |||||||| |||             ||| ||||||||| |||    
T  28426099 gtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgtgtgttgtgttagagattcc-------------ttcgggctcaaacgaaa 28426185  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| ||| |  ||||||||| |||||||||||||||||| | |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||     
T  28426186 tggcaacaggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttca 28426285  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgc 884  Q
    ||||||| |||| |||| |||||| ||||||||||||   ||| |||||| |||||||||| |||||    
T  28426286 agtctgactctgatactctagtgccagctctatcgtcagcgggacatggtaatttagaattatatgc 28426352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 618 - 895
Target Start/End: Complemental strand, 41835595 - 41835317
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| | |||||||||| ||||||||| ||||| ||||||| ||||| ||||||||||| ||  | |||||||||| |||||||||||||    
T  41835595 gtgcaatgtggatgccacgttccttgaacgtaaccatattacaacttttgcgtgttgtgttagagactctcgcagacaatttattcgggctcaaacaaaa 41835496  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||  | | |  |||||||||||||||||||||||| ||| | |||||||||||  |  |||| ||||| ||||  |||||||||||||||||||||||||    
T  41835495 tgacagctggcaaatatgacagttttggagggggatgcagtagccttactcgagacccttcattttgcggatgcaaacagatgggaccgggttgtcttcg 41835396  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||  |||||  ||||| |||||||| | |||||||||| ||||||||||||||  ||||  ||||||| |||||||||    
T  41835395 agttcgattcatctactctagtgcaaacgctatcgtctccgggccatggtgattcggaatcctatgctattgtttctag 41835317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 618 - 884
Target Start/End: Complemental strand, 49119671 - 49119418
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||| |||||||| |||             ||| ||||||||| |||    
T  49119671 gtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgtgtgttgtgttagagattcc-------------ttcgggctcaaacgaaa 49119585  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| ||| |  ||||||||| |||||||||||||||||| | |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||     
T  49119584 tggcaacaggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttca 49119485  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgc 884  Q
    ||||||| |||| |||| |||||| ||||||||||||   ||| |||||| |||||||||| |||||    
T  49119484 agtctgactctgatactctagtgccagctctatcgtcagcgggacatggtaatttagaattatatgc 49119418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 618 - 895
Target Start/End: Complemental strand, 51735255 - 51734978
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||| ||||||| |||||||| |||  |||||||||||||||||||||  ||||| |||||||||| |||  | |||||||||| |||| |||| |||    
T  51735255 gtgcaacgtggatgccgcgttccatgattgtaaccatcttacatcttttgtgtgttgtgttagagacttccgttgacaatttattcgggcttaaacgaaa 51735156  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||  | ||   |||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||| |||| ||| || ||||||||||    
T  51735155 tgacagcgtgcaaatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctgatgtgaatagatagga-cgagttgtcttcg 51735057  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| |  ||  ||||| |||||||||||||||||||||||| ||||||||||| | |||| |||| || |||||||||    
T  51735056 agtcaggctcctctactctagtgcaagctctatcgtctctggaccatggtgattcataattctatgatattgtttctag 51734978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 55734912 - 55735190
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||||||||||||||| ||| ||| |  |||||| ||||||||||||| ||||| |||||||||||||  | ||||||| ||| ||||||||| |||    
T  55734912 gtgcaatgtggatgtcgcgctccatgatctcaaccatattacatcttttgcgtgttgtgttagagactcccatgagcaatttgttcgggctcaaacgaaa 55735011  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||||| ||   |||||||||||| ||||||||||||||| | ||||||||||| ||  |||| |||| || || ||||| |||| |||||||| | ||||    
T  55735012 tggaagcgagcaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgttgttgcgaacacatggaaccgggttattttcg 55735111  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| |||||  ||||| ||||||||||||||||||||  || ||||||||||| |||||| ||||||| |||||||||    
T  55735112 agtccgattcatctactctagtgcaagctctatcgtcttcggaccatggtgattcagaattctatgctattgtttctag 55735190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 625 - 895
Target Start/End: Complemental strand, 43840584 - 43840312
Alignment:
Q  625 gtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaac 724  Q
    ||||||| |||||||  ||| | ||||||||||||||||||||| | ||| |||||||||||||| || |||||||||| || |||||| |||||| | |    
T  43840584 gtggatgccgcgttctatgagcataaccatcttacatcttttgcgttttgtgttagagactcccgtggacaatttattcggggtcaaacgaaatggcagc 43840485  T
Q  725 ggaaaaatatgacagttttggagggggaggcaatcgcc-ttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctg 823  Q
    ||| |||||||||||| |||||||||||| |||   || ||||||||||| ||||| |||||||||||||||| ||| |||||| ||||||||||||  |    
T  43840484 ggacaaatatgacagtgttggagggggagacaacaacctttactcgatgccattcactttgctgatgtgaacaaatgagaccggtttgtcttcgagttcg 43840385  T
Q  824 attctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    | || |||||| || |||||||||||||||||  || |||||||||||  ||||| ||||||| |||||||||    
T  43840384 actcagctactctaatgcaagctctatcgtcttcggaccatggtgattcggaattctatgctattgtttctag 43840312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 2064756 - 2065034
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||| | | |||||| ||||||||||||| ||||||| | ||| ||||| |||||||||||||| ||  ||||||||| |||||||||||||    
T  2064756 gtgcaatgtggacgccacgttccatgaccgtaaccatattacatcctctgcgtgttgtgttagagactcccgcggataatttattcgggctcaaacaaaa 2064855  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||  | |||  |||||||||||| ||| ||||||||||| | ||||||||||| ||  |||| |||||||||| ||||||||||   ||||||||||| |    
T  2064856 tgacagcgggcaaatatgacagtattgaagggggaggcagtagccttactcgacgcccttcactttgctgatgagaacagatggagtcgggttgtctttg 2064955  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  ||||| |||  ||||||||||||||||  || ||||||||||   |||| ||||||| |||||||||    
T  2064956 agtcggactcatctactctagcccaagctctatcgtctccaggtcatggtgattcgaaattatatgctattgtttctag 2065034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 742 - 884
Target Start/End: Complemental strand, 26422762 - 26422620
Alignment:
Q  742 ttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgc 841  Q
    |||||| |||||||| | |||||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||| |||| |||| ||||||    
T  26422762 ttggagagggaggcagtagccttactcgatgctatttactttgctgatgtaaacagatgggatcgggttgtcttcgagtctgactctgatactctagtgc 26422663  T
Q  842 aagctctatcgtctctgggccatggtgatttagaattttatgc 884  Q
    |||||||||||||   ||| ||| |||||| |||||| |||||    
T  26422662 aagctctatcgtcagcgggacatagtgattcagaattctatgc 26422620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 739 - 895
Target Start/End: Complemental strand, 47226493 - 47226336
Alignment:
Q  739 gttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttag 838  Q
    |||||||||||||||| ||| | ||||||||| ||| |||| |||||||||| ||||||||| || || ||||| |||||||| || ||  |||||||||    
T  47226493 gttttggagggggaggtaatagtcttactcgaggcttttcactttgctgatgcgaacagatgagatcgagttgtgttcgagtccgactcatctactttag 47226394  T
Q  839 tgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
     ||||||||||||||||   ||||||||||||| ||| || ||||||| |||||||||    
T  47226393 agcaagctctatcgtcttcaggccatggtgattcagatttatatgctattgtttctag 47226336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 53357350 - 53357293
Alignment:
Q  174 attctagattatctccttgagcgccaaaggatccaaatgtgtctcattagctagaaaa 231  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53357350 attctagattatctccttgagctccaaaggatccaaatgtgtctcattagctagaaaa 53357293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 808 - 895
Target Start/End: Complemental strand, 24990027 - 24989940
Alignment:
Q  808 gttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctatgtttctag 895  Q
    |||||||| |||||||| || |||||| |||||||||||||| ||||||||||||| ||||||| | |||| |||| |||||||||||    
T  24990027 gttgtctttgagtctgactcagctactctagtgcaagctctaccgtctctgggccacggtgattcaaaattctatgttatgtttctag 24989940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 53354807 - 53354743
Alignment:
Q  258 caagtattgaattttttatttgatagatttttcgtaactctcttccaactaagtctataacatca 322  Q
    |||||||| |||||||||||||| |||||| || ||||||||||||||| |||| | ||||||||    
T  53354807 caagtattcaattttttatttgacagatttgtcataactctcttccaaccaagtttgtaacatca 53354743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 53354714 - 53354672
Alignment:
Q  336 tctcctacatgccctttttgcgttagaaatgatgaaactattt 378  Q
    |||||||||| |||||| |||||| ||||||||||||||||||    
T  53354714 tctcctacattccctttctgcgttggaaatgatgaaactattt 53354672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 2e-79; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 618 - 884
Target Start/End: Complemental strand, 22767541 - 22767275
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| |||||||| |||| |||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||||| |||    
T  22767541 gtgcaatgtggatgccgcgttccatgacagtaatcatcttacatcttttgcgtgttgtgttagagattcccgggggcaatttattcgggctcaaacgaaa 22767442  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| |||||  ||||||||| |||||||||||||||||| | |||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  22767441 tggcaacgggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcg 22767342  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgc 884  Q
    ||| ||| |||| |||| |||||||||||||||||||   ||| |||||| ||| |||||| |||||    
T  22767341 agtttgactctgatactctagtgcaagctctatcgtcagcgggacatggtaattcagaattctatgc 22767275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 621 - 887
Target Start/End: Original strand, 8387992 - 8388258
Alignment:
Q  621 caatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatgg 720  Q
    ||||||||||| |||||| | ||||||| |  || |||||||||| || ||||| ||||||||||| || |||||||| |||||||||||||| ||||||    
T  8387992 caatgtggatgccgcgtttcatgaccgttaaaatattacatctttcgcgtgttgtgttagagactctcgtgggcaattcattcaggctcaaacgaaatgg 8388091  T
Q  721 aaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagt 820  Q
     |||| | |||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||| | || |||||||||||||||||||||||||||||    
T  8388092 caacgaacaaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgcggttgggaacagatgggaccgggttgtcttcgagt 8388191  T
Q  821 ctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    | || || |||||| |||||||||| ||||||||||  ||||||||||||| |||||||||||||||    
T  8388192 ccgactcagctactctagtgcaagcgctatcgtctccaggccatggtgattcagaattttatgctat 8388258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 27292337 - 27292615
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||||| |||||| |||  |||||||| |||||| |||||||||||| ||||||||||| || ||||||||||||| |||||||||||||    
T  27292337 gtgcaatgtggatgtcacgttccatgatagtaaccatattacatattttgcatgttgtgttagagactctcgtgggcaatttattcgggctcaaacaaaa 27292436  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | |||| |||||| |  |||||| ||||||||||||| |||||||| |||||  |||| ||||||||||  |||||||||||||||||||||||||    
T  27292437 tggcagcggacaaatattattgttttgaagggggaggcaatagccttactagatgcccttcactttgctgatgataacagatgggaccgggttgtcttcg 27292536  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||  || ||  || || |||||||| ||||||||||||  |||||||||||||| ||||||||||||| |||||||||    
T  27292537 agttcgactcatctgctctagtgcaaactctatcgtctccaggccatggtgatttggaattttatgctattgtttctag 27292615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 4268002 - 4268280
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||| ||||| | |||||| |||||  |||||||| ||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||    
T  4268002 gtgcaacgtggacgccgcgtttcttgattgtaaccatattacatcttttgcgtgttgtgttagagactctcgtgggcaatttattcaggctcaaacaaaa 4268101  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | |||  |||||||||||||||||||||||||||| | |||||||| || ||  |||| ||||||||||  ||||| |||||||||||| ||||||    
T  4268102 tggcagcgggcaaatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaacaggtgggaccgggttttcttcg 4268201  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  ||||| |||||||||||||||| |||| ||||||||||||||  ||||| ||||||| |||||||||    
T  4268202 agtccgactcatctactctagtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctag 4268280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 20204858 - 20205136
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| |||||||| ||||| ||||||| ||||||||||| ||| ||| | |||||||||||| ||| ||||||| ||||||||||| |||    
T  20204858 gtgcaatgtggatgccgcgttccatgaccataaccatattacatcttttacattttgtgctagagactcccgcgggaaatttatccaggctcaaacgaaa 20204957  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| |||||  |||||||||||| ||||||||||||||| | ||||||||||| || ||||| |||| || || |||||||||| |||| ||||||||||    
T  20204958 tggcaacgggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactttgttgttgcgaacagatggaaccgagttgtcttcg 20205057  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  ||||| |||||||||||||||| |||| ||| |||||||||| | |||| ||||||| |||||||||    
T  20205058 agtccgactcatctactctagtgcaagctctatcctctccgggtcatggtgattcaaaattctatgctattgtttctag 20205136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 622 - 887
Target Start/End: Complemental strand, 27533187 - 27532921
Alignment:
Q  622 aatgtggatgtcgcgttccttgaccgtaaccatcttacatctttt-gcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatgg 720  Q
    ||||||||||||||||||| ||| ||||||||  ||||||||||| || ||||| |||||||||||||| ||||||||||||| ||||||||| ||||||    
T  27533187 aatgtggatgtcgcgttccatgatcgtaaccagtttacatctttttgcgtgttgtgttagagactcccgtgggcaatttattcgggctcaaacgaaatgg 27533088  T
Q  721 aaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagt 820  Q
     | | | ||||||| ||||||||||||||||||||||| || ||| ||||||  ||||| |||||||||||||| ||||||||||||||||| |||||||    
T  27533087 tagcaggaaaatataacagttttggagggggaggcaatagctttattcgatgtcattcactttgctgatgtgaatagatgggaccgggttgttttcgagt 27532988  T
Q  821 ctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    | || | |||| ||||||||||  || ||||||||| ||| |||||||||| |||||| | ||||||    
T  27532987 ccgactttgcttctttagtgcagactttatcgtctccgggtcatggtgattcagaattctttgctat 27532921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 618 - 895
Target Start/End: Complemental strand, 26597741 - 26597463
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| |||||| | ||| | | | ||| |||||||||| || ||||| |||||||||||||| || ||||| |||| ||||||||| |||    
T  26597741 gtgcaatgtggatgccgcgtttcatgatcatcaacatattacatctttcgcgtgttgtgttagagactcccgtggacaattcattcgggctcaaacgaaa 26597642  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| ||||   |||||||||| ||||||||||||||||| | |||||||||||||| ||||| ||||| | || ||| ||||| ||||||||||||||||    
T  26597641 tggcaacgagcaaatatgacaattttggagggggaggcagttgccttactcgatgccattcactttgcagttgggaatagatgagaccgggttgtcttcg 26597542  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || || |||||| |||||||||| |||||||||| ||||||||||||||  |||||||||| || |||||||||    
T  26597541 agtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgttattgtttctag 26597463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 618 - 895
Target Start/End: Complemental strand, 41941021 - 41940743
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| |||||||| |||||||||| |||||||||||||||  ||| | |||| ||||||||| ||| |||||||||  |||||||| |||    
T  41941021 gtgcaatgtggatgccgcgttccatgaccgtaactatcttacatcttttgtgtgtagtgttaaagactcccgtgggaaatttattcgagctcaaacgaaa 41940922  T
Q  718 tggaa-acggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttc 816  Q
    ||  | |  |||||||||||||||||||||||||||| |||| ||||||||| |||  ||||| |||||| |||||||||  ||| ||||||||||||||    
T  41940921 tgacatatagaaaaatatgacagttttggagggggagacaatagccttactcaatgtcattcactttgctcatgtgaacaactgg-accgggttgtcttc 41940823  T
Q  817 gagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    ||||| || ||  ||||| |||||||| ||||||||||||||| |||| |||||| |||||| ||||||| |||||||||    
T  41940822 gagtccgactcaactactctagtgcaaactctatcgtctctggaccattgtgattcagaattctatgctattgtttctag 41940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 12660219 - 12660497
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||  |  || |||||||||| ||||||||| |||    
T  12660219 gtgcaatgtggatgccgcgttccatgaacgtaaccatcttacatcttttgcgtgttgtgttagagactttcatggacaatttattcgggctcaaacgaaa 12660318  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | |||  |||||||||||| || ||| |||||||| | | |||||||||||  ||||| |||||| ||||||||| ||| ||||| ||| || |||    
T  12660319 tggcagcgggcaaatatgacagtgttagagcgggaggcagtagtcttactcgatgtcattcactttgctaatgtgaacaaatgagaccgtgttatcgtcg 12660418  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    ||||||| || |||||| ||||||||||||||||||||  |||||| ||||||| |||||| |||| || |||||||||    
T  12660419 agtctgactcagctactctagtgcaagctctatcgtcttcgggccacggtgattcagaattctatgatattgtttctag 12660497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 25730711 - 25730989
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||  |||||||| ||||||||||||| |||||  |||  | ||||| ||||||| ||| || ||| |||||||||  |||||||| |||    
T  25730711 gtgcaatgtggattccgcgttccatgaccgtaaccatattacaattttcacgtgttgtgttagagtctcacgcgggaaatttattcgagctcaaacgaaa 25730810  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | |||  |||||||||||||||||||||||||||| | ||||||||||| ||  |||| |||||||||| ||||||||||||| | ||||||||||    
T  25730811 tggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaacagatgggactgagttgtcttcg 25730910  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  ||||| ||||||||||||||||||||| ||| |||||||||| |||||| |||| || |||||||||    
T  25730911 agtccgactcatctactctagtgcaagctctatcgtctcagggtcatggtgattaagaattctatgttattgtttctag 25730989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 648 - 895
Target Start/End: Complemental strand, 34652507 - 34652260
Alignment:
Q  648 taaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggag 747  Q
    ||||||||||||||||||||  ||||| |||||||||||||| ||||||||||| | | ||||||||||| || | ||   |||||||||||| ||| |     
T  34652507 taaccatcttacatcttttgtgtgttgtgttagagactcccgtgggcaatttatccggtctcaaacaaaa-ggcagcgagcaaatatgacagtgttgtaa 34652409  T
Q  748 ggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctc 847  Q
    ||||||  |||  ||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||| | || ||  ||||| ||||||||||||    
T  34652408 ggggagataataaccttactcgatgccattcactttgccgatgtgaacagatgggatcgggttgtcttcgagcccgactcgactactctagtgcaagctc 34652309  T
Q  848 tatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    || ||||||||||||||||||||| |||||| |||| || |||||||||    
T  34652308 taccgtctctgggccatggtgattcagaattatatgttattgtttctag 34652260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 626 - 895
Target Start/End: Complemental strand, 15989025 - 15988755
Alignment:
Q  626 tggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacg 725  Q
    ||||||||||||||| |||||| |||||| ||||| ||||||| ||||  || |||||||  || | ||||||||||| ||||||||| |||||| | ||    
T  15989025 tggatgtcgcgttccatgaccgcaaccatattacaacttttgcgtgttatgtcagagactttcgcgagcaatttattcgggctcaaacgaaatggcagcg 15988926  T
Q  726 gaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgat 825  Q
    || |||||||||||||||||||||||||||| |  |||||||||| ||  || | |||||||||| ||||| ||||||||||||||||||| |||| |      
T  15988925 gacaaatatgacagttttggagggggaggcagtaaccttactcgaggccctttactttgctgatgcgaacatatgggaccgggttgtcttcaagtccgtc 15988826  T
Q  826 tctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    || |||||| |||||||| |||||||||||   |||||||||||||  ||||| |||| || |||||||||    
T  15988825 tcagctactctagtgcaatctctatcgtcttcaggccatggtgattcggaattctatgttattgtttctag 15988755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 619 - 871
Target Start/End: Complemental strand, 11375796 - 11375544
Alignment:
Q  619 tgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaat 718  Q
    |||||||||||||  ||||||| ||| ||||||||| ||||| ||||||||||||| ||||||||||| ||  ||  |||||||| | ||||||| ||||    
T  11375796 tgcaatgtggatgctgcgttccatgaacgtaaccatattacaacttttgcatgttgtgttagagactctcgcaggtgatttattcggactcaaacgaaat 11375697  T
Q  719 ggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcga 818  Q
    || | ||   ||||||||||||||||||||||||| || | ||||||||||| ||  |||| ||||| ||||  || | |||||||||||||||||| ||    
T  11375696 ggcagcgagtaaatatgacagttttggagggggagacagtagccttactcgaggcccttcattttgcggatgcaaatatatgggaccgggttgtctttga 11375597  T
Q  819 gtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatt 871  Q
    |||||||||  ||| | ||||||||||||||||||||| || |||||||||||    
T  11375596 gtctgattcatctattctagtgcaagctctatcgtctccggtccatggtgatt 11375544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 618 - 820
Target Start/End: Original strand, 37448028 - 37448230
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||| |||||||||||| ||||| ||||| ||||||||||||||| |||  |||||| ||||||||||| || || |||| ||||| | |||||||||||    
T  37448028 gtgcgatgtggatgtcgtgttccatgaccataaccatcttacatcgtttatatgttgtgttagagactctcgtggacaatgtattcggactcaaacaaaa 37448127  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | ||   ||| |||||||| ||| | ||||||||  | |||||||||||||  ||||| ||||||||||||||||||||| |||||||||||||||    
T  37448128 tggcagcgtgcaaacatgacagtgttgaaaggggaggcggtagccttactcgatgtcattcactttgctgatgtgaacagatggaaccgggttgtcttcg 37448227  T
Q  818 agt 820  Q
    |||    
T  37448228 agt 37448230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 465 - 613
Target Start/End: Complemental strand, 26031626 - 26031480
Alignment:
Q  465 acaccacttatagttacagacaactgagttgtagttaaatatataagtaatcgtttaaataagagtttcaaccatagaaaaataggcatttacctatgga 564  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    | |||||||||  | ||| | ||| ||||||||||||||||| |||||||    
T  26031626 acaccacttatagttacagacaactgaattgtagttaaatatataa----tggtttaaatagtaattttacccacagaaaaataggcatttaactatgga 26031531  T
Q  565 taatgcaaattgacagcaaaattgttgtctttcggac--ttacctacagaa 613  Q
    ||||||||||||||  ||||| ||||||||||| |||  ||||||||||||    
T  26031530 taatgcaaattgacgacaaaactgttgtctttcagacttttacctacagaa 26031480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 626 - 713
Target Start/End: Complemental strand, 30223075 - 30222988
Alignment:
Q  626 tggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaac 713  Q
    |||| |||||||||| |||| |||||||| ||||||||||||| ||||| |||||||||| ||  ||||||||||||| |||||||||    
T  30223075 tggacgtcgcgttccatgactgtaaccatattacatcttttgcgtgttgtgttagagacttccatgggcaatttattcgggctcaaac 30222988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 746 - 883
Target Start/End: Original strand, 32632546 - 32632683
Alignment:
Q  746 agggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagc 845  Q
    |||||||| ||||  |||||||||| ||  |||| ||| |||||  ||| ||||   ||||||||||||| |||||||| ||  ||||||||||| ||||    
T  32632546 agggggagacaataaccttactcgaggcctttcattttactgatacgaatagattaaaccgggttgtctttgagtctgactcatctactttagtgtaagc 32632645  T
Q  846 tctatcgtctctgggccatggtgatttagaattttatg 883  Q
    | ||||||||| | ||||| |||||| |||||| ||||    
T  32632646 tttatcgtctccgagccatagtgattcagaattctatg 32632683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 36855318 - 36855265
Alignment:
Q  551 catttacctatggataatgca-aattgacagcaaaattgttgtctttcggactt 603  Q
    |||||||||||| |||||||| ||||||||||||||||| |||||||| |||||    
T  36855318 catttacctatgaataatgcataattgacagcaaaattgctgtctttcagactt 36855265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 544 - 603
Target Start/End: Original strand, 10240701 - 10240761
Alignment:
Q  544 aaataggcatttacctatggataatgca-aattgacagcaaaattgttgtctttcggactt 603  Q
    ||||||| |||||||  ||||||||||| ||||||||||||||||| |||||||| |||||    
T  10240701 aaataggtatttacccctggataatgcataattgacagcaaaattgctgtctttcagactt 10240761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 450
Target Start/End: Complemental strand, 36855387 - 36855354
Alignment:
Q  417 aatcttgacattttttcatttaaaaataattgaa 450  Q
    |||||||||| |||||||||||||||||||||||    
T  36855387 aatcttgacaatttttcatttaaaaataattgaa 36855354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 8e-79; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 622 - 883
Target Start/End: Original strand, 7127130 - 7127391
Alignment:
Q  622 aatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatgga 721  Q
    |||||||||| |||||||| ||| ||||||| ||||||||| | ||||||||| ||||||||||| |||||| |||||||||  || ||||  |||||||    
T  7127130 aatgtggatgccgcgttccatgaacgtaaccgtcttacatcctctgcatgttgtgttagagactctcgggggaaatttattcgtgcacaaatgaaatgga 7127229  T
Q  722 aacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtc 821  Q
    |||||  |||||||| ||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  7127230 aacgggcaaatatgaaagttttggagggggaggtagtagccttactcgatgctattcactttgctgatgtgaacagatgggaccgggttgccttcgagtc 7127329  T
Q  822 tgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatg 883  Q
    ||| | ||||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||    
T  7127330 tgactatgctactttagtgcaagctctttcgtctccgggccatggtgatttagtattctatg 7127391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 622 - 883
Target Start/End: Complemental strand, 8451403 - 8451142
Alignment:
Q  622 aatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatgga 721  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||| |||||| |||||||||||  | || |||||||||| ||||||||||||| |||    
T  8451403 aatgtggatgccgcgttccatgaccgtaaccattttacatcttttggatgttgtgttagagactcttgtggacaatttattcgggctcaaacaaaaagga 8451304  T
Q  722 aacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtc 821  Q
    | |||  |||||||||||| ||||||||||||||| | || ||||||||| | ||||| || |||||||||||| |||||||||||||||||||||||||    
T  8451303 agcgggcaaatatgacagtgttggagggggaggcagtagctttactcgattccattcacttcgctgatgtgaacggatgggaccgggttgtcttcgagtc 8451204  T
Q  822 tgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatg 883  Q
    ||| ||  ||||||||||||||||| |||||||||  || ||||||||||  ||||||||||    
T  8451203 tgactcatctactttagtgcaagctttatcgtctccaggtcatggtgattcggaattttatg 8451142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 23853835 - 23854113
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||| ||||||| | |||||||| |||||||||| || ||||||||||||| ||||  |||||||||||||| ||||||||||||| || |||||| |||    
T  23853835 gtgcgatgtggacgccgcgttccatgaccgtaactatattacatcttttgcgtgttatgttagagactcccgtgggcaatttattcgggttcaaacgaaa 23853934  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||  | |||||||||||||||||||||||||| |||||| | |||||||| || || ||||| |||| |||||  |||||||| ||| | ||||||||||    
T  23853935 tgacagcggaaaaatatgacagttttggagggtgaggcagtagccttacttgaggccattcactttgttgatgctaacagatgagactgagttgtcttcg 23854034  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  | ||| ||||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||    
T  23854035 agtccgactcatcaactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgctattgtttctag 23854113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 622 - 871
Target Start/End: Complemental strand, 478336 - 478087
Alignment:
Q  622 aatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatgga 721  Q
    ||||||||||   |||||| |||||  |||||||| ||||||||||  ||||| |||||||| | ||  || |||||||| | ||||||||||||||||     
T  478336 aatgtggatgcaacgttccatgaccacaaccatctaacatcttttgtgtgttgtgttagagatttccatggtcaatttatccgggctcaaacaaaatggc 478237  T
Q  722 aacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtc 821  Q
    |||||  |||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||| ||||||| ||||||||||||||| ||||||| ||    
T  478236 aacgggcaaatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctaatgtgaatagatgggaccgggttatcttcgaatc 478137  T
Q  822 tgattctgctactttagtgcaagctctatcgtctctgggccatggtgatt 871  Q
    ||| ||| ||||| ||||||||||||||||||||| |||  |||||||||    
T  478136 tgactctactactctagtgcaagctctatcgtctccgggttatggtgatt 478087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 649 - 895
Target Start/End: Complemental strand, 185842 - 185597
Alignment:
Q  649 aaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggagg 748  Q
    |||| ||||||||||| |||| |||| || ||||||||| | ||| |||||||   ||||||||| ||||||||||||  ||||||||||||||||||||    
T  185842 aaccgtcttacatcttctgcacgttgtgtaagagactcc-gagggaaatttatctgggctcaaacgaaatggaaacgggcaaatatgacagttttggagg 185744  T
Q  749 gggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctct 848  Q
    || ||| | | |||||||||||| ||||||| |||| ||||||||| |||||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  185743 gg-aggaagtagccttactcgatactattcactttgttgatgtgaatagatggaaccgggttgtctacgagtctgactctgctactttagtgcaagctct 185645  T
Q  849 atcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
     ||||||| || ||||||||||| |||||| ||||||| |||||||||    
T  185644 ttcgtctccggaccatggtgattcagaattctatgctattgtttctag 185597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 618 - 887
Target Start/End: Original strand, 13414926 - 13415195
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||||||||||||| ||||| ||| ||||||||| ||||| ||||||  ||||   |||||||||  || ||||||||||||| ||||||||| |||    
T  13414926 gtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgtttttttagagactttcgcgggcaatttattcgggctcaaacgaaa 13415025  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | |||| |||||||||||||||||||||||||||| | ||||||||||| ||  |||  ||||| ||||  ||||||||||| || |||||||| |    
T  13415026 tggcagcggacaaatatgacagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgagttgtctttg 13415125  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    |||| |||||| ||||| ||||||||| | ||||||| | ||||||||||||||  ||||||||||||||    
T  13415126 agtccgattcttctactctagtgcaaggtatatcgtccccgggccatggtgattctgaattttatgctat 13415195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 692 - 887
Target Start/End: Complemental strand, 40588940 - 40588745
Alignment:
Q  692 ggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgt 791  Q
    |||||||||||| ||||||||| |||||| | |||  |||||| ||||||||||||||||||||| | ||| ||||||| ||  |||  ||||| ||||     
T  40588940 ggcaatttattcgggctcaaacgaaatggcagcgggcaaatataacagttttggagggggaggcagtagccgtactcgaggcccttcgttttgcggatgc 40588841  T
Q  792 gaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
     |||||||| |||||||||||||| |||||||||||  ||||| ||||| || |||||||||| | |||||||| |||||  ||||| ||||||||    
T  40588840 aaacagatgagaccgggttgtctttgagtctgattcatctactctagtgtaaactctatcgtccccgggccatgatgattctgaattctatgctat 40588745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 626 - 895
Target Start/End: Original strand, 37711990 - 37712254
Alignment:
Q  626 tggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacg 725  Q
    ||||||| |||| || |||| ||||  ||||||||| |||||| ||||| |||||| ||||  | ||||||||||||   ||| |||| |||||  | ||    
T  37711990 tggatgttgcgtaccatgactgtaattatcttacattttttgcgtgttgtgttagaaactcgtgtgggcaatttatttgagctaaaacgaaatgacagcg 37712089  T
Q  726 gaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgat 825  Q
    | ||||||||||||||||| ||||| ||| | | || |||    |||| ||||| |||| ||||||||||||||| || | |||| ||||| ||| |||     
T  37712090 ggaaaatatgacagttttgaagggg-aggtagtagcttta----atgccattcactttgttgatgtgaacagatgagatcaggttatcttctagtttgac 37712184  T
Q  826 tctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
     |||||||| ||||| ||||||||| |||| | || |||||||||| |||||  ||||||| |||||||||    
T  37712185 cctgctactctagtgtaagctctattgtct-tcggacatggtgattcagaatactatgctattgtttctag 37712254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 767 - 895
Target Start/End: Complemental strand, 3606874 - 3606745
Alignment:
Q  767 tcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatgg 866  Q
    ||||||| |||||||||  |||||||||||||||| |||  ||||| ||| |||| || ||  | |||||||| ||| |||||||||||| ||| |||||    
T  3606874 tcgatgccattcaatttcttgatgtgaacagatggaaccaagttgttttcaagtccgactcaacaactttagtacaaactctatcgtctcagggtcatgg 3606775  T
Q  867 tgatttagaattttatgcta-tgtttctag 895  Q
    ||| || ||||| ||||||| |||||||||    
T  3606774 tgacttggaattctatgctattgtttctag 3606745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 730 - 821
Target Start/End: Original strand, 9496797 - 9496887
Alignment:
Q  730 aatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtc 821  Q
    |||||||||||||||||||| |||||| | |||||||| ||||  ||||| |||| ||||||||||  ||||||||| |||||||| |||||    
T  9496797 aatatgacagttttggagggtgaggcagtagccttacttgatgacattcactttgttgatgtgaac-tatgggaccgtgttgtctttgagtc 9496887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 410 - 450
Target Start/End: Complemental strand, 7888598 - 7888558
Alignment:
Q  410 ccgttataatcttgacattttttcatttaaaaataattgaa 450  Q
    ||||||||||||||||| |||||| ||||||||||||||||    
T  7888598 ccgttataatcttgacaatttttcctttaaaaataattgaa 7888558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 786 - 895
Target Start/End: Original strand, 11870335 - 11870445
Alignment:
Q  786 tgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgct 885  Q
    ||||| ||||||||| ||| || ||  | |||||||||| || |||||| | ||||||||||||| ||||| | ||||||||||||  || || ||||||    
T  11870335 tgatgggaacagatgagactggatttccatcgagtctgactcagctactcttgtgcaagctctattgtctcggagccatggtgattcggatttctatgct 11870434  T
Q  886 a-tgtttctag 895  Q
    | |||||||||    
T  11870435 attgtttctag 11870445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 802 - 855
Target Start/End: Complemental strand, 598337 - 598284
Alignment:
Q  802 gaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtct 855  Q
    ||||||||||||||| |||| || |  |||||| ||||||||||||||||||||    
T  598337 gaccgggttgtcttcaagtcggacttagctactctagtgcaagctctatcgtct 598284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 3e-72; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 622 - 884
Target Start/End: Complemental strand, 9328881 - 9328620
Alignment:
Q  622 aatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatgga 721  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||||| ||||| |||||||| |||||||  ||||||||||  |||||||| ||||||     
T  9328881 aatgtggatgccgcgttccatgaccgtaaccatcttacatcatttgcgtgttgtgttagagattcccggga-caatttattcgagctcaaacgaaatggc 9328783  T
Q  722 aacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtc 821  Q
    ||||| |||||||||| |||||||||||||||||| | |||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  9328782 aacgggaaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttggagtc 9328683  T
Q  822 tgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgc 884  Q
    ||| |||| |||| |||||||||||||||||||   ||| |||||| ||| |||||| |||||    
T  9328682 tgactctgatactctagtgcaagctctatcgtcagcgggacatggtaattcagaattctatgc 9328620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 16731836 - 16732114
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| || ||||| |||||| |||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||| |||    
T  16731836 gtgcaatgtggatgccgtgttccatgaccgcaaccatattacatcttttgcatgttgtgttagagattcccgcgggcaatttattcgggctcaaacgaaa 16731935  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| |  ||  |||||||||||| ||||||||||||||| | ||||||||||| || ||||| | |||||||| |||||||||| |||| ||||||||||    
T  16731936 tggcagagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaacagatggaaccgagttgtcttcg 16732035  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  ||||| |||||||||||||||| |||| |||||||||||||| |||||| | ||||| |||||||||    
T  16732036 agtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctag 16732114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 17709970 - 17710248
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| || ||||| |||||| |||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||| |||    
T  17709970 gtgcaatgtggatgccgtgttccatgaccgcaaccatattacatcttttgcatgttgtgttagagattcccgcgggcaatttattcgggctcaaacgaaa 17710069  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| |  ||  |||||||||||| ||||||||||||||| | ||||||||||| || ||||| | |||||||| |||||||||| |||| ||||||||||    
T  17710070 tggcagagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaacagatggaaccgagttgtcttcg 17710169  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  ||||| |||||||||||||||| |||| |||||||||||||| |||||| | ||||| |||||||||    
T  17710170 agtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctag 17710248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 22289144 - 22289422
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| |||||| | ||||||| | ||| |||||||||| || ||||| |||||||| ||||| |||||||| |||| | |||| || |||    
T  22289144 gtgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagattcccgtgggcaattcattcggactcagacgaaa 22289243  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| ||||   ||||||||||||||||||||||||||   | |||||||||||||| ||||| ||||| | || ||||| ||||||||||| ||||||||    
T  22289244 tggcaacgagcaaatatgacagttttggagggggaggtggttgccttactcgatgccattcactttgccgttgggaacaaatgggaccgggctgtcttcg 22289343  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || || |||||| |||||||||| |||||||||| |||||||||||||| |||||||||||||| |||||||||    
T  22289344 agtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctag 22289422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 16098393 - 16098671
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||| |   |||||| ||||||||||||| |||| |||||||| ||||| |||||||||||||   |||||||||||| ||||||||| |||    
T  16098393 gtgcaatgtggacgcatcgttccatgaccgtaaccatattacttcttttgcgtgttgtgttagagactcccataggcaatttattcgggctcaaacgaaa 16098492  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    |||||||| | |||||||||| |||||||||| |||| | | |||||||| || ||  |||||||||||||||  |||| ||||||||||||||||||||    
T  16098493 tggaaacgaacaaatatgacaattttggagggagaggtagtagccttactagaggcccttcaatttgctgatgctaacaaatgggaccgggttgtcttcg 16098592  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  ||||| |||| ||||||| |||||||| |||||||||||||| |||||| |||| || |||||||||    
T  16098593 agtccgactcatctactctagtacaagctccatcgtctccgggccatggtgattcagaattctatgatattgtttctag 16098671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 618 - 887
Target Start/End: Complemental strand, 30493893 - 30493625
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||| |||||||||| |||| |||| ||||||| ||||||| |||||| ||||| |||||| | || |  |||||||||| |||||||||||| |||    
T  30493893 gtgcaatatggatgtcgcattccatgactgtaaccaacttacatattttgcgtgttgtgttagaaattctcatgggcaatttactcaggctcaaacgaaa 30493794  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | | || || ||||||||||||||||||| ||||| | |||||||| ||||   |||| || |||||| |||||||||| |||| |||||||||||    
T  30493793 tggcagcagacaagtatgacagttttggagggg-aggcagtagccttacttgatgtcgttcacttagctgatatgaacagatgagaccaggttgtcttcg 30493695  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    |||| || ||   |||| ||||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  30493694 agtccgactcaattactctagtgcaagctctatcgtcttcgggccatggtgattcagaattttatgctat 30493625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 651 - 895
Target Start/End: Complemental strand, 29201208 - 29200961
Alignment:
Q  651 ccatcttacatcttttgcatgttgggttagagactcccggggg--caatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggagg 748  Q
    |||| ||| |||||||||||||||  ||||||||||  | | |  || ||||||| ||||||||| |||||  | |||| ||||||||||||||||||||    
T  29201208 ccatattatatcttttgcatgttgtattagagactcatgtgtggccagtttattcgggctcaaacgaaatgacagcggacaaatatgacagttttggagg 29201109  T
Q  749 gggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctct 848  Q
    |||||| |      ||||| ||||  ||||| ||||||||||||||||||||| | |||||||||||||||||||| || |||||| |||||||||||||    
T  29201108 gggaggtagcatgtttacttgatgtcattcactttgctgatgtgaacagatggaaacgggttgtcttcgagtctgactcagctactctagtgcaagctct 29201009  T
Q  849 atcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||    
T  29201008 atcgtctctgggccatggtgattcagaattctatgctattgtttctag 29200961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 618 - 871
Target Start/End: Original strand, 1581518 - 1581772
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||||||||||  ||||||| ||||| ||||||| ||||||||||||| ||||| | |||||||||| | ||  | ||||| | ||||||||| |||    
T  1581518 gtgcaatgtggatgctgcgttccatgaccataaccatattacatcttttgcgtgttgtgctagagactccagcggatagtttatccgggctcaaacgaaa 1581617  T
Q  718 tggaaacggaaaaatatgacagttttgga-gggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttc 816  Q
    ||| |  ||  |||||| | |||||| || |||||| ||| | ||||||||||| ||  |||| |||||||||| ||||||||| || |||||| | ||     
T  1581618 tggcagagggcaaatattatagtttttgaggggggatgcagtagccttactcgaggcccttcactttgctgatgcgaacagatgagatcgggttctattg 1581717  T
Q  817 gagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatt 871  Q
    |||||  | ||  ||||  || ||||| |||||||||||| || |||||||||||    
T  1581718 gagtccaactcatctacactaatgcaaactctatcgtctccggaccatggtgatt 1581772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 619 - 824
Target Start/End: Original strand, 17877312 - 17877517
Alignment:
Q  619 tgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaat 718  Q
    |||||||||||||||||||||| |||  |||||||| |||||| | |||| ||| | |||| ||||||||  ||| | || ||||  |||||||| ||||    
T  17877312 tgcaatgtggatgtcgcgttccatgattgtaaccatattacatttgttgcgtgtggcgttatagactcccatgggaagttcattcgtgctcaaacgaaat 17877411  T
Q  719 ggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcga 818  Q
     | | |||  |||||||||||| ||||||||||||| | | ||||||||| | ||  |||| ||| |  ||| |||||||||| | ||||||||||||||    
T  17877412 cgcagcggggaaatatgacagtattggagggggaggaagtagccttactcaaggcccttcactttacaaatgcgaacagatggaatcgggttgtcttcga 17877511  T
Q  819 gtctga 824  Q
    ||||||    
T  17877512 gtctga 17877517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 763 - 887
Target Start/End: Original strand, 3275082 - 3275206
Alignment:
Q  763 ttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggcc 862  Q
    |||||| |||||||||| ||||||| || ||||| || |||| |||||||||||||||| || || |||||| |||||||||| ||||| ||||| ||||    
T  3275082 ttactcaatgctattcactttgctgttgggaacatataggactgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcatctctaggcc 3275181  T
Q  863 atggtgatttagaattttatgctat 887  Q
    | | ||||| | |||||||||||||    
T  3275182 acgatgattcataattttatgctat 3275206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 805 - 895
Target Start/End: Original strand, 3601742 - 3601833
Alignment:
Q  805 cgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||||||| |||||||| || ||  ||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  3601742 cgggttgttttcgagtccgactcatctactctagtgcaagctttatcgtctctggaccatggtgattcagaattttatgctattgtttctag 3601833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 656 - 820
Target Start/End: Complemental strand, 30824720 - 30824557
Alignment:
Q  656 ttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaa-cggaaaaatatgacagttttggagggggagg 754  Q
    ||||||||||||||||||| |||||||||| ||| |   ||||||||| |||| ||| ||||  || | |||| |||||||||||||||| ||||  |||    
T  30824720 ttacatcttttgcatgttgtgttagagactgccgcgaataatttattcgggctaaaaaaaaaaagacagcggataaatatgacagttttgaaggg--agg 30824623  T
Q  755 caatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagt 820  Q
    || | ||||||||||| ||  |||| ||| || ||| |||||||||||| | ||||||||||||||    
T  30824622 cagtagccttactcgaggcccttcacttttctaatgcgaacagatgggatcaggttgtcttcgagt 30824557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 743
Target Start/End: Complemental strand, 34578538 - 34578437
Alignment:
Q  642 tgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagtt 741  Q
    ||||||| | ||| ||||||||||||| ||||| ||| || | ||||| ||||||||||||| |||||| || |||||  ||||   |||||||||||||    
T  34578538 tgaccgttaacatattacatcttttgcgtgttgtgttcgaaattcccgtgggcaatttattcgggctcagacgaaatgacaacgagcaaatatgacagtt 34578439  T
Q  742 tt 743  Q
    ||    
T  34578438 tt 34578437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 829 - 895
Target Start/End: Original strand, 24139145 - 24139212
Alignment:
Q  829 gctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||||| ||||||||||||| ||||||| ||| |||| ||||||  |||||||||||| |||||||||    
T  24139145 gctactctagtgcaagctctgtcgtctccgggtcatgttgatttgaaattttatgctattgtttctag 24139212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 808 - 887
Target Start/End: Original strand, 44480893 - 44480972
Alignment:
Q  808 gttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    |||||||||||||| || || |||||| || ||||| |  ||||||||| ||| ||||||||||  ||||||||||||||    
T  44480893 gttgtcttcgagtccgactccgctactctactgcaaacgttatcgtctccgggtcatggtgattcggaattttatgctat 44480972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Original strand, 20878260 - 20878316
Alignment:
Q  393 ccgacaattcagaggtcccgttataatcttgacattttttcatttaaaaataattgaa 450  Q
    |||||||||| |||| | |||||||||||  ||||||||| |||||||||||||||||    
T  20878260 ccgacaattcggaggccacgttataatctctacatttttt-atttaaaaataattgaa 20878316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 28031520 - 28031464
Alignment:
Q  393 ccgacaattcagaggtcccgttataatcttgacattttttcatttaaaaataattgaa 450  Q
    |||| ||||| |||| | |||||||||||||||| |||| ||||||||||||||||||    
T  28031520 ccgataattcggaggcctcgttataatcttgacaatttt-catttaaaaataattgaa 28031464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 508
Target Start/End: Original strand, 31446949 - 31446990
Alignment:
Q  467 accacttatagttacagacaactgagttgtagttaaatatat 508  Q
    |||||||||||| ||| |||||| ||||||||||||||||||    
T  31446949 accacttatagtgacaaacaactaagttgtagttaaatatat 31446990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 3e-72; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 25682554 - 25682832
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| || ||| | ||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||   ||||||||| |||    
T  25682554 gtgcaatgtggatgccgtgtttcatgaacgtaaccatcttacatcttttgcgtgttgtgttagagactcccgtgggcaatttatctgggctcaaacgaaa 25682653  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| |||||  |||||||||||| ||||||||||||||| | |||||||||||||  ||||| |||||| ||||||||||||||||||||| ||||||||    
T  25682654 tggcaacgggcaaatatgacagtgttggagggggaggcagtagccttactcgatgtcattcactttgctaatgtgaacagatgggaccgggctgtcttcg 25682753  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    ||| ||| || |||||| |||| |||||||||||||||| ||||||  ||||||||||||| ||| ||| |||||||||    
T  25682754 agtttgactcagctactctagtacaagctctatcgtctccgggccacagtgatttagaattctatactattgtttctag 25682832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 44527156 - 44527434
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||| | |||||||| |||| |||||||| ||||||||||||| ||||| |||||||||||  | ||||||||||||| |||||||||||||    
T  44527156 gtgcaatgtggacgccgcgttccatgactgtaaccatattacatcttttgcgtgttgtgttagagactcttgtgggcaatttattcgggctcaaacaaaa 44527255  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | |||| |||||||||||||||||||||||||||| | |||||||| || ||  |||| ||||||||||  |||||||||||||||||||||||||    
T  44527256 tggcagcggacaaatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaacagatgggaccgggttgtcttcg 44527355  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  ||||| | |||||||||||||| |||| ||||||||||||||  ||||| ||||||| |||||||||    
T  44527356 agtccgactcatctactcttgtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctag 44527434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 618 - 895
Target Start/End: Complemental strand, 48950008 - 48949730
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| |||||| | ||||||| | ||| |||||||||| || ||||| ||||||||||||||  ||||||| |||| ||||||||| |||    
T  48950008 gtgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagactcccgttggcaattcattcgggctcaaacgaaa 48949909  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| ||||   |||||||| ||||||||||||||||||| | |||||||||||||| ||||| |||| || || ||||||||||||||||||||||||||    
T  48949908 tggcaacgagcaaatatgaaagttttggagggggaggcagttgccttactcgatgcgattcactttgttgttgggaacagatgggaccgggttgtcttcg 48949809  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||   | || |||||| |||||||||| |||||||||| ||||||||||||||  ||||||||||||| |||||||||    
T  48949808 agttcaactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctag 48949730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 51113218 - 51113496
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| || ||| | ||||||| | ||| |||||||||| || ||||| |||||||||||||| |||||||| |||| | ||||||| |||    
T  51113218 gtgcaatgtggatgccgtgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagactcccgtgggcaattcattcggactcaaacgaaa 51113317  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| ||||   |||||| || |||||||||||||||||| | |||||||||||||  ||||| |||| || || ||||||||||||||||||||||||||    
T  51113318 tggcaacgagcaaatataaccgttttggagggggaggcagttgccttactcgatgtcattcactttgttgttgggaacagatgggaccgggttgtcttcg 51113417  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || || |||||| |||||||||| |||||||||||||||||||||||||  || |||||||||| |||||||||    
T  51113418 agtccgactcagctactctagtgcaagcgctatcgtctctgggccatggtgattcggagttttatgctattgtttctag 51113496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 623 - 895
Target Start/End: Original strand, 36733604 - 36733877
Alignment:
Q  623 atgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaa 722  Q
    ||||||||| |||||| | ||||  ||||||||||||| ||||||  ||||| ||||||||||| || || |||||||||| |||||||||||||||  |    
T  36733604 atgtggatgccgcgtttcatgactataaccatcttacaccttttgtgtgttgtgttagagactctcgtggacaatttattcgggctcaaacaaaatgaca 36733703  T
Q  723 acggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtct 822  Q
    ||||  ||||||| |||||||||||||||||||| | | ||||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  36733704 acgggtaaatatggcagttttggagggggaggcagtagtcttactcaatgttattcactttgctgatgtgaacaaatgggaccgggttgtcttcgagtct 36733803  T
Q  823 gattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    || |||   ||| ||||||||||| ||||||||| |||||||| ||||| | |||| |||| || |||||||||    
T  36733804 gactctataactctagtgcaagctatatcgtctccgggccatgatgattcataattctatgttattgtttctag 36733877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 635 - 887
Target Start/End: Original strand, 48166157 - 48166409
Alignment:
Q  635 cgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatat 734  Q
    |||||| ||||||||||||||||||||||||||  ||||| |||||||||||||| || |||||||||| ||||||||  |||||| | ||   ||||||    
T  48166157 cgttccatgaccgtaaccatcttacatcttttgtgtgttgtgttagagactcccgtggtcaatttattcgggctcaaatgaaatggcagcgagcaaatat 48166256  T
Q  735 gacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctact 834  Q
    ||||||||||||| ||||| |||| |||||||||||||  ||||| |||||| ||||||| | |||||| ||||||||||||||||||||||| ||||||    
T  48166257 gacagttttggagtgggagacaatagccttactcgatgtcattcactttgcttatgtgaatatatgggatcgggttgtcttcgagtctgattcagctact 48166356  T
Q  835 ttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
     || |||||||||||| ||||  || | ||||||||  |||||| ||||||||    
T  48166357 ctattgcaagctctatagtcttgggacgatggtgatacagaattctatgctat 48166409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 618 - 887
Target Start/End: Original strand, 4395062 - 4395330
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||| | |||||||| ||||||||||||| | ||| |||||||||| || ||||||||||| || ||||||||||| | ||||||| | |||    
T  4395062 gtgcaatgtggaagccgcgttccatgaccgtaaccatatcacaacttttgcatgctgtgttagagactctcgtgggcaatttatccgggctcaatcgaaa 4395161  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | |||  |||||||| |||||| || ||||||||| | ||||||||||| ||  |||| |||||||||| ||| |||||||||| |||| ||||||    
T  4395162 tggcagcgggcaaatatgagagtttt-gaaggggaggcactagccttactcgaggcccttcactttgctgatgcgaatagatgggaccaggttatcttcg 4395260  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    ||||  | ||  ||||| |||||||||||||||||||||  || |||||||||| |||||| ||| ||||    
T  4395261 agtccaactcatctactctagtgcaagctctatcgtctcaaggtcatggtgattcagaattctatcctat 4395330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 622 - 895
Target Start/End: Original strand, 52109361 - 52109634
Alignment:
Q  622 aatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatgga 721  Q
    |||||||| || | ||||| ||||||||| ||||||| ||||||||||||||| |||||||||||| | || |||||||||||||||||||| ||||||     
T  52109361 aatgtggacgttgtgttccatgaccgtaatcatcttatatcttttgcatgttgtgttagagactcctgtggacaatttattcaggctcaaacgaaatggc 52109460  T
Q  722 aacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtc 821  Q
    | |||  ||||||||   ||||||||||||| ||| | ||||||||||| |   |||| ||||||||||  |||||||||||  |||||||||| ||||     
T  52109461 agcgggcaaatatgatcattttggagggggatgcagtagccttactcgaggtccttcactttgctgatgctaacagatggga-tgggttgtctttgagtg 52109559  T
Q  822 tgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    ||||||  ||||| |||| |||||||||| ||||| || |||||||||||  ||||| |||| || |||||||||    
T  52109560 tgattcatctactctagtacaagctctattgtctccggaccatggtgattcggaattctatgttattgtttctag 52109634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 5609242 - 5609520
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||||||||||||||||||| |||| |||||||| ||||| |||| || || || | ||||||||| |  | ||||||||||| |||||||||   |    
T  5609242 gtgcaatgtggatgtcgcgttccatgactgtaaccatattacaactttcgcgtgctgtgctagagactcacacgagcaatttattcgggctcaaactcta 5609341  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||  | |||| |||||||| ||||||| ||||||||||| | ||||||||||| |   |||| |||| || || ||||||||| || |||||||||||||    
T  5609342 tgacagcggacaaatatgatagttttgaagggggaggcagtagccttactcgaggtccttcactttgatgttgcgaacagatgagatcgggttgtcttcg 5609441  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||  || ||  ||||| |||||||| |||||||||||| ||| |||||||||| |||||| ||||||| |||||||||    
T  5609442 agttcgactcatctactctagtgcaaactctatcgtctcagggtcatggtgattcagaattctatgctattgtttctag 5609520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 729 - 895
Target Start/End: Original strand, 44602766 - 44602933
Alignment:
Q  729 aaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattct 828  Q
    |||||||||| |||||||||||||| || | | |||||||||||  ||||| ||| |||||||||||||||| |||||||||| |||||||||| | ||     
T  44602766 aaatatgacaattttggagggggagacattagtcttactcgatgtcattcactttactgatgtgaacagatgagaccgggttgccttcgagtctaactcc 44602865  T
Q  829 gctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||||| |||||||||||||||| |||| |||||||||||||| | |||| ||||||| |||||||||    
T  44602866 gctactctagtgcaagctctatcatctccgggccatggtgattcaaaattctatgctattgtttctag 44602933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 618 - 866
Target Start/End: Complemental strand, 16817083 - 16816836
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||| ||| | |||||||| || | |||||||| ||||||||||||  | |||  |||||||||| || | |||||||||||  |||||| |||||    
T  16817083 gtgcaatgcggacgccgcgttccatgtctgtaaccatattacatcttttgtgtattgttttagagactctcgcgtgcaatttattcgagctcaatcaaaa 16816984  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| |  ||  |||||||||| ||||||||||| ||||| | ||||||||||| ||  |||| ||||||||||  |||||||||||||||||||||||||    
T  16816983 tggcagtgggcaaatatgacaattttggagggg-aggcagtagccttactcgaggcccttcattttgctgatgcaaacagatgggaccgggttgtcttcg 16816885  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatgg 866  Q
    |||| || ||  ||||| |||| |||| |||| |||||| | |||||||    
T  16816884 agtccgactcgtctactctagttcaagttctaccgtctccgagccatgg 16816836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 619 - 749
Target Start/End: Original strand, 24538414 - 24538544
Alignment:
Q  619 tgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaat 718  Q
    ||||||||||||| |||||||  | ||||||||||  ||| ||||||||  ||||| |||||||||||||| ||  ||||||||| ||||||||| || |    
T  24538414 tgcaatgtggatgccgcgttctataaccgtaaccaagttagatcttttgtgtgttgtgttagagactcccgtggataatttattcgggctcaaacgaatt 24538513  T
Q  719 ggaaacggaaaaatatgacagttttggaggg 749  Q
    || | | |  ||||| |||||||||||||||    
T  24538514 ggcagcaggcaaatacgacagttttggaggg 24538544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 805 - 895
Target Start/End: Original strand, 2885313 - 2885404
Alignment:
Q  805 cgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    ||||||||||||||||| || || |||||| ||||||||||||||||||||  |||| |||||||||  || || ||||||| |||||||||    
T  2885313 cgggttgtcttcgagtcagactcagctactctagtgcaagctctatcgtcttcgggctatggtgattcggagttatatgctattgtttctag 2885404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 468 - 618
Target Start/End: Complemental strand, 22572257 - 22572109
Alignment:
Q  468 ccacttatagttacagacaactgagttgtagttaaatatataagtaatcgtttaaataagagtttcaaccatagaaaaataggcatttacctatggataa 567  Q
    ||||||||||||| ||| |||| ||||||||||||||||    ||||| ||||||||| || ||| | | | ||| |||   ||||||||||||||||||    
T  22572257 ccacttatagttatagaaaactaagttgtagttaaatatgg--gtaatggtttaaatatgatttttaccgacagacaaa---gcatttacctatggataa 22572163  T
Q  568 tgca-aattgacagcaaaattgttgtctttcggactt--acctacagaaaaatg 618  Q
    |||| |||| |||| ||||||| |||||||  |||||  |||||||||||||||    
T  22572162 tgcataattaacagtaaaattgatgtcttttagactttaacctacagaaaaatg 22572109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 8904899 - 8904841
Alignment:
Q  392 cccgacaattcagaggtcccgttataatcttgacattttttcatttaaaaataattgaa 450  Q
    ||||||||||| |||| | | ||| |||||||||| |||||||||||||||||||||||    
T  8904899 cccgacaattcggaggactctttacaatcttgacaatttttcatttaaaaataattgaa 8904841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 817 - 895
Target Start/End: Original strand, 21031251 - 21031330
Alignment:
Q  817 gagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat-gtttctag 895  Q
    |||||||| || |||| | ||||||||||||||||||||| || | |||||||||  |||||||||| ||| ||||||||    
T  21031251 gagtctgactcagctattctagtgcaagctctatcgtctccggactatggtgattcggaattttatgttatagtttctag 21031330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 596
Target Start/End: Complemental strand, 8904812 - 8904759
Alignment:
Q  544 aaataggcatttacctatggataatgca-aattgacagcaaaattgttgtcttt 596  Q
    |||||| ||||||||||||||||||||| ||||||| | ||||||| |||||||    
T  8904812 aaatagacatttacctatggataatgcataattgacggtaaaattgatgtcttt 8904759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 450
Target Start/End: Complemental strand, 14615140 - 14615076
Alignment:
Q  385 ggtcattcccgacaattcagaggtcccgttataatcttgacattttttcatttaaaaataattgaa 450  Q
    |||| |||||||||||| |||||||| ||| |||| ||||||  |||||||||||||| |||||||    
T  14615140 ggtcgttcccgacaatttagaggtccagttgtaattttgaca-attttcatttaaaaagaattgaa 14615076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 7e-70; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 649 - 887
Target Start/End: Complemental strand, 42340530 - 42340292
Alignment:
Q  649 aaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggagg 748  Q
    |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| |||||||||||||||| | |||  | |||||||||| |||||||    
T  42340530 aaccatcttacatcttttgcgtgttgtgttagagactctcgtggacaatttattcgggctcaaacaaaatggcagcgggcagatatgacagtgttggagg 42340431  T
Q  749 gggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctct 848  Q
    |||||||||| ||| |||||||||  ||||| ||||| |||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||    
T  42340430 gggaggcaatagccctactcgatgtcattcactttgcagatgtgaacagatgggaccgagttgtcttcgagtcagactcagctactttagtgcaagctct 42340331  T
Q  849 atcgtctctgggccatggtgatttagaattttatgctat 887  Q
     ||||||| |||||||||||||| |||||| ||||||||    
T  42340330 gtcgtctccgggccatggtgattcagaattctatgctat 42340292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 53496935 - 53497213
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||| | |||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||  | ||||||||||||| |||||||||||||    
T  53496935 gtgcaatgtggacgccgcgttccatgaccgtaaccatattacatcttttgcgtgttgtgttagagactcttgtgggcaatttattcgggctcaaacaaaa 53497034  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||  | |||| |||| |||||||||| |||||||||||| | |||||||| || ||  |||| ||||||||||  |||||||||||||||||||||||||    
T  53497035 tgacagcggacaaatgtgacagtttttgagggggaggcagtagccttactagaggcccttcactttgctgatgctaacagatgggaccgggttgtcttcg 53497134  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || ||  ||||| | ||||||||||||||||||| ||||||||||||||  ||||| ||||||| |||||||||    
T  53497135 agtccgactcatctactcttgtgcaagctctatcgtctccgggccatggtgattcggaattctatgctattgtttctag 53497213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 55199414 - 55199692
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| | |||| | ||||||| |  || |||||||||| || ||||| |||||||||||||| |||||||| |||| ||||||||| |||    
T  55199414 gtgcaatgtggatgccacgtttcatgaccgtcaatatattacatctttcgcgtgttgtgttagagactcccgtgggcaattcattcgggctcaaacgaaa 55199513  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||  | | || |||||||||||||||||||||||||||| | |||||||||||||| ||||| |||| || ||  ||||||||||||||||||||||||     
T  55199514 tgacagctgataaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgttgttggaaacagatgggaccgggttgtcttca 55199613  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||| || || |||||| | |||||||| |||||||||  ||| ||||||||||  ||||||||||||| |||||||||    
T  55199614 agtccgactcagctactctggtgcaagcgctatcgtctacgggtcatggtgattcggaattttatgctattgtttctag 55199692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 46007204 - 46007480
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggtt-agagactcccgggggcaatttattcaggctcaaacaaa 716  Q
    |||||||||||||| || ||||| | |  |||||||||||| ||||||||| ||||  ||| |||||||| || ||  ||||||||| ||||||||| ||    
T  46007204 gtgcaatgtggatgccgtgttccattattgtaaccatcttatatcttttgcgtgttttgtttagagactctcgtggaaaatttattcgggctcaaacgaa 46007303  T
Q  717 atggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttc 816  Q
    |||| | |||  ||||| |||| ||||  |||||||| || | |||||||| ||||| ||||| ||||  ||| ||||||||||||  ||||| ||||||    
T  46007304 atggcagcgggcaaatacgacaattttttagggggagacagtagccttacttgatgccattcactttgtcgatatgaacagatggg--cgggt-gtcttc 46007400  T
Q  817 gagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    ||||| |||||  ||||| |||||||| || ||||||||| ||||||||| ||||  ||||||||||||| |||||||||    
T  46007401 gagtccgattcaactactctagtgcaaactatatcgtctccgggccatggcgattcggaattttatgctattgtttctag 46007480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 628 - 806
Target Start/End: Complemental strand, 647485 - 647307
Alignment:
Q  628 gatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacgga 727  Q
    |||| |||||||| ||| ||||||||| ||||||||||||| ||||| |||||||||| |    |||||||| | | ||||||||| |||||| | |||     
T  647485 gatgccgcgttccatgagcgtaaccatattacatcttttgcgtgttgtgttagagacttctctaggcaatttttccgggctcaaacgaaatggcagcggg 647386  T
Q  728 aaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccg 806  Q
      |||||||||||| ||||||||||||||   |||||||||||||  ||||| ||||||||||||||||||||||||||    
T  647385 ctaatatgacagttatggagggggaggcagcagccttactcgatgtcattcactttgctgatgtgaacagatgggaccg 647307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 760 - 871
Target Start/End: Complemental strand, 647305 - 647194
Alignment:
Q  760 gccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgg 859  Q
    |||||||||||||  ||||| |||||||||||||||||||| ||||| ||| ||||||||||||| ||  ||||| ||||||||||||||||||||| ||    
T  647305 gccttactcgatgtcattcactttgctgatgtgaacagatgtgaccgagttatcttcgagtctgactcatctactctagtgcaagctctatcgtctccgg 647206  T
Q  860 gccatggtgatt 871  Q
    ||||||||||||    
T  647205 gccatggtgatt 647194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 729 - 895
Target Start/End: Complemental strand, 11020353 - 11020186
Alignment:
Q  729 aaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattct 828  Q
    |||||||||| |||||||||||||| ||   || ||||||||||||||| | |||||||||| ||||| |||| || ||||||||||||||||||| |      
T  11020353 aaatatgacacttttggagggggagacatcagctttactcgatgctatttactttgctgatgggaacaaatggaactgggttgtcttcgagtctgactta 11020254  T
Q  829 gctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
     |||||  |||| ||| ||||||||||| |||||||||||||| |||||| | ||||| |||||||||    
T  11020253 actactccagtgtaaggtctatcgtctccgggccatggtgattcagaattctgtgctattgtttctag 11020186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 806 - 895
Target Start/End: Complemental strand, 27608999 - 27608909
Alignment:
Q  806 gggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||||||||||||||| || || |||||| |||||||||| |||||||||| ||||||||||||||  ||||||||||||| |||||||||    
T  27608999 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctag 27608909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 778 - 871
Target Start/End: Original strand, 24176833 - 24176926
Alignment:
Q  778 caatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatt 871  Q
    ||||||| |||| |||||||||| ||  |||||||||||||||||||  |  ||||| ||||||||||||||||||||||||| ||||||||||    
T  24176833 caatttgttgatttgaacagatgagattgggttgtcttcgagtctgacacaactactctagtgcaagctctatcgtctctgggtcatggtgatt 24176926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 646 - 767
Target Start/End: Complemental strand, 27941250 - 27941129
Alignment:
Q  646 cgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttgg 745  Q
    ||||||||| ||| || |||||| |||||  ||||||| || || || |||||||||| | |||||||||||||| | |||| |||||||| ||||||||    
T  27941250 cgtaaccatattatattttttgcgtgttgtattagagattctcgaggacaatttattcggactcaaacaaaatggcagcggacaaatatgatagttttgg 27941151  T
Q  746 agggggaggcaatcgccttact 767  Q
    ||||||||||| | ||||||||    
T  27941150 agggggaggcagtagccttact 27941129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 806 - 887
Target Start/End: Complemental strand, 34497468 - 34497387
Alignment:
Q  806 gggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    |||||||||||||||| || || |||||| |||||||||| |||||||||| ||||||||||||||  ||||||||||||||    
T  34497468 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctat 34497387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 621 - 851
Target Start/End: Original strand, 48227319 - 48227550
Alignment:
Q  621 caatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatgg 720  Q
    ||||||||||| ||| || | | ||||||||||| ||||||||||||| ||||| ||||||||||| || ||||||||||||| |||| |||| |||  |    
T  48227319 caatgtggatgccgcatttcattaccgtaaccatgttacatcttttgcgtgttgtgttagagactctcgcgggcaatttattcgggcttaaacgaaacag 48227418  T
Q  721 aaacggaaaaatatgacagttttggagggggaggcaatcgccttactcga-tgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgag 819  Q
     |  || |||| ||||| || |||||| |||| ||| | |||||||||||   |   ||| ||||||||||||||  |||   |||| |||||||| |||    
T  48227419 cagtgggaaaacatgactgtattggagtgggatgcagtagccttactcgagaccccatcactttgctgatgtgaatggataaaaccgagttgtctttgag 48227518  T
Q  820 tctgattctgctactttagtgcaagctctatc 851  Q
    || || ||  ||||| ||||||||||||||||    
T  48227519 tccgactcatctactctagtgcaagctctatc 48227550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 619 - 790
Target Start/End: Original strand, 2615397 - 2615568
Alignment:
Q  619 tgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaat 718  Q
    ||||||||||||  |||||| | ||| | ||||||| |||||| |||||   |||| ||||||| ||   | |||||||| |||| ||||||||| || |    
T  2615397 tgcaatgtggataccgcgtttcatgatcataaccatattacattttttgtgcgttgtgttagaggcttttgtgggcaattcattcgggctcaaacgaatt 2615496  T
Q  719 ggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatg 790  Q
    || | |||  |||||||| ||||||||||||||||||| | |||||||||||||   |||| ||||||||||    
T  2615497 ggcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgatgtcgttcactttgctgatg 2615568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 763 - 895
Target Start/End: Original strand, 2121129 - 2121262
Alignment:
Q  763 ttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggcc 862  Q
    ||||||||||  ||||| ||||||||| |||| |||||||| || ||||| || ||||| || |   ||||| || |||||||||||| |||||| ||||    
T  2121129 ttactcgatgtcattcactttgctgatatgaatagatgggatcgtgttgtttttgagtccgacttaactactctaatgcaagctctattgtctctaggcc 2121228  T
Q  863 atggtgatttagaattttatgcta-tgtttctag 895  Q
    ||| | ||| | |||||| ||||| |||||||||    
T  2121229 atgattattcataattttgtgctattgtttctag 2121262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 838 - 887
Target Start/End: Complemental strand, 19117784 - 19117735
Alignment:
Q  838 gtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    |||||||| |||||||||| ||||||||||||||  ||||||||||||||    
T  19117784 gtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctat 19117735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 802 - 887
Target Start/End: Complemental strand, 31341829 - 31341740
Alignment:
Q  802 gaccgggttgtcttcgagtctgattctgctactttagtgcaagctctat----cgtctctgggccatggtgatttagaattttatgctat 887  Q
    ||||||||| ||||||| ||||| ||  ||||| |||||||||||||||    |||||| ||| |||||||||| |||||||||| ||||    
T  31341829 gaccgggttatcttcgaatctgactccactactctagtgcaagctctatcctacgtctccgggtcatggtgattcagaattttatactat 31341740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 451
Target Start/End: Original strand, 33633710 - 33633765
Alignment:
Q  396 acaattcagaggtcccgttataatcttgacattttttcatttaaaaataattgaag 451  Q
    ||||||| ||||||| | |||||||||||||  |||||||||||||| ||||||||    
T  33633710 acaattcggaggtcctgatataatcttgacaacttttcatttaaaaagaattgaag 33633765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 887
Target Start/End: Complemental strand, 27747754 - 27747700
Alignment:
Q  833 ctttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    |||||||||| ||| ||||||||| |||||||||||||| | |||| ||||||||    
T  27747754 ctttagtgcaggctttatcgtctccgggccatggtgattcaaaattctatgctat 27747700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 830 - 883
Target Start/End: Original strand, 2615598 - 2615651
Alignment:
Q  830 ctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatg 883  Q
    ||||| |||||| ||||||||||||| || |||||||||||| |||||| ||||    
T  2615598 ctactctagtgcgagctctatcgtctttgtgccatggtgattcagaattctatg 2615651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 7e-67; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 618 - 887
Target Start/End: Original strand, 88462 - 88731
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||||||||||  ||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||| || ||||||||||||| ||||||||  |||    
T  88462 gtgcaatgtggatgctgcgttccatgaccgtaaccatattacaacttttgcatgttgtgttagagactctcgcgggcaatttattcgggctcaaatgaaa 88561  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| || ||  |||||||||||||||||||||||||||| | ||||||||||| ||  |||| |||| |||||  |||||||||||||||||||||||||    
T  88562 tggcaatgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgttgatgctaacagatgggaccgggttgtcttcg 88661  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    |||| || ||  ||||| |||||||||||||||||||||  |  |||||||||| |||||| ||||||||    
T  88662 agtccgactcatctactctagtgcaagctctatcgtctcaagatcatggtgattcagaattctatgctat 88731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 637 - 895
Target Start/End: Complemental strand, 34696167 - 34695910
Alignment:
Q  637 ttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatga 736  Q
    |||| ||||| ||| ||| ||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||| | |  ||| | |||  ||||||||    
T  34696167 ttccatgaccataagcatattacatcttttgcgtgttgcgttagagactcccgtgggcaatttattcgggctcaatcga--tggcagcgggcaaatatga 34696070  T
Q  737 cagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctacttt 836  Q
    |||||||||||||||||||| | ||||||||| | || ||||| ||||||||||| || |||||||| ||||||||||||||||| || || |||||| |    
T  34696069 cagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtcaatagatgggaacgggttgtcttcgagtccgactccgctactct 34695970  T
Q  837 agtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||||||||  ||||||||| ||| |||||||||| |||||||||||||| |||||||||    
T  34695969 agtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctattgtttctag 34695910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 637 - 895
Target Start/End: Complemental strand, 34718579 - 34718322
Alignment:
Q  637 ttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatga 736  Q
    |||| ||||| ||| ||| ||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||| | |  ||| | |||  ||||||||    
T  34718579 ttccatgaccataagcatattacatcttttgcgtgttgcgttagagactcccgtgggcaatttattcgggctcaatcga--tggcagcgggcaaatatga 34718482  T
Q  737 cagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctacttt 836  Q
    |||||||||||||||||||| | ||||||||| | || ||||| ||||||||||| || |||||||| ||||||||||||||||| || || |||||| |    
T  34718481 cagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtcaatagatgggaacgggttgtcttcgagtccgactccgctactct 34718382  T
Q  837 agtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||||||||  ||||||||| ||| |||||||||| |||||||||||||| |||||||||    
T  34718381 agtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctattgtttctag 34718322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 650 - 856
Target Start/End: Complemental strand, 44017570 - 44017364
Alignment:
Q  650 accatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggaggg 749  Q
    |||||||||||||||| || ||||| |||||||||||||| ||||||||||||| |||||||| ||||||  | ||   |||||||||||||||||||||    
T  44017570 accatcttacatctttcgcgtgttgtgttagagactcccgtgggcaatttattcgggctcaaataaaatgacaccgtgcaaatatgacagttttggaggg 44017471  T
Q  750 ggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctcta 849  Q
    |||| |||   ||||||||||||| |||||  ||||| ||||||||| ||| ||||  ||||||||||||||||| || | |||||||||||||||||||    
T  44017470 ggagacaacaaccttactcgatgccattcacgttgctaatgtgaacatatgagaccaagttgtcttcgagtctgactccgttactttagtgcaagctcta 44017371  T
Q  850 tcgtctc 856  Q
    |||||||    
T  44017370 tcgtctc 44017364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 618 - 887
Target Start/End: Complemental strand, 12130922 - 12130653
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| | |||||| ||||||||||||| ||  ||||||||  ||||| |||||||||||||| |||||| |||||| ||||||||| |||    
T  12130922 gtgcaatgtggatgccccgttccatgaccgtaaccatattctatcttttgggtgttgtgttagagactcccgcgggcaaattattcgggctcaaacgaaa 12130823  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||  | ||   |||||||| ||| ||||||||||||||| | |||||||| || ||| |||| ||||||||||  || |||||| | |||||| ||||||    
T  12130822 tgacagcgagcaaatatgatagtgttggagggggaggcagtagccttacttgaggctcttcactttgctgatgcaaatagatggaatcgggttatcttcg 12130723  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    ||||||| ||  ||||| |||| ||||||||||| |||  ||| |||||||||| |||||| ||||||||    
T  12130722 agtctgactcatctactctagtccaagctctatcatcttcgggacatggtgattcagaattctatgctat 12130653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 618 - 818
Target Start/End: Complemental strand, 18345770 - 18345571
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||| |   |||||| ||| ||||||||| |||| |||||||| ||||| |||||||||| ||| ||| ||||||||    ||||||| |||    
T  18345770 gtgcaatgtggacgcaacgttccatgagcgtaaccatattacttcttttgcgtgttgtgttagagacttccgtgggtaatttatttgaactcaaacgaaa 18345671  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| |||||| ||||||||||||||| |||||||||||| | ||||||||||| ||  |||| ||||||||||  ||||||||||| ||  |||||||||    
T  18345670 tggtaacggacaaatatgacagtttt-gagggggaggcagtagccttactcgaggcccttcactttgctgatgctaacagatgggatcgaattgtcttcg 18345572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 729 - 895
Target Start/End: Complemental strand, 1418154 - 1417987
Alignment:
Q  729 aaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattct 828  Q
    ||||||||| ||| || |||| ||| || | ||||||||||| |  |||  |||||||||||  |||||||||||| ||||||||||||||||||| ||     
T  1418154 aaatatgacggttatgaagggagagacagtagccttactcgaggtaatttgatttgctgatgcaaacagatgggactgggttgtcttcgagtctgactca 1418055  T
Q  829 gctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
     ||||| |||| |||||||||| |||||||| | ||||||||| |||||| ||||||| |||||||||    
T  1418054 tctactctagttcaagctctattgtctctggactatggtgattcagaattctatgctattgtttctag 1417987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 696 - 799
Target Start/End: Original strand, 9709910 - 9710013
Alignment:
Q  696 atttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaac 795  Q
    |||||||||||||||||| |||||| |||| | |||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||| | || ||||    
T  9709910 atttattcaggctcaaacgaaatggcaacgaacaaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgcggttgggaac 9710009  T
Q  796 agat 799  Q
    ||||    
T  9710010 agat 9710013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 659 - 895
Target Start/End: Original strand, 26198637 - 26198863
Alignment:
Q  659 catcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggagggggaggcaat 758  Q
    |||||||||  || || |||||||||||  | |||||||||||||  ||||||| ||||||| | || | |||||||||||||||||||||||| ||| |    
T  26198637 catcttttgtgtgctgtgttagagactcatgtgggcaatttattcgagctcaaataaaatggtagcgaacaaatatgacagttttggagggggatgcagt 26198736  T
Q  759 cgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctg 858  Q
     ||||| || ||||| ||| | |||||| ||||||||        |||||  ||||||||||| || || |||||| ||||||||||||||||||||||     
T  26198737 agcctt-cttgatgccatttactttgctaatgtgaac--------ccggg--gtcttcgagtccgactcagctactctagtgcaagctctatcgtctcta 26198825  T
Q  859 ggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    || |||||||| ||  |||| ||||||| |||||||||    
T  26198826 ggtcatggtgaattgaaattctatgctattgtttctag 26198863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 784 - 887
Target Start/End: Complemental strand, 13109987 - 13109884
Alignment:
Q  784 gctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatg 883  Q
    ||||||| || ||||||||||  ||||||||||||||| || ||| ||||| ||||| ||||||||||||||  ||||||||||||||| ||||| || |    
T  13109987 gctgatgcgatcagatgggacatggttgtcttcgagtccgactcttctactctagtggaagctctatcgtcttcgggccatggtgatttggaattataag 13109888  T
Q  884 ctat 887  Q
    ||||    
T  13109887 ctat 13109884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 781 - 895
Target Start/End: Original strand, 22845602 - 22845717
Alignment:
Q  781 tttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaatttt 880  Q
    |||||||||| ||||||||||||||||||||||||||||||  | |   ||||| |||||||||||||||||||||  |  |||||||||| |||||| |    
T  22845602 tttgctgatgcgaacagatgggaccgggttgtcttcgagtccaactaatctactctagtgcaagctctatcgtctccagatcatggtgattcagaattct 22845701  T
Q  881 atgcta-tgtttctag 895  Q
    | |||| |||||||||    
T  22845702 aggctattgtttctag 22845717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 796 - 854
Target Start/End: Original strand, 9710036 - 9710094
Alignment:
Q  796 agatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtc 854  Q
    ||||||||||||||||||||||||||||| | || |||| |||||||||||||||||||    
T  9710036 agatgggaccgggttgtcttcgagtctgactttgatactctagtgcaagctctatcgtc 9710094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 761 - 871
Target Start/End: Original strand, 14827126 - 14827236
Alignment:
Q  761 ccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctggg 860  Q
    ||||||||||||  ||||| ||| ||||| |||| ||||| || || |||||||| || ||||| |  |||||| |||||||||||||||||| | ||||    
T  14827126 ccttactcgatgtcattcactttactgatatgaatagatgagatcgagttgtctttgaatctgacttagctactctagtgcaagctctatcgtgtttggg 14827225  T
Q  861 ccatggtgatt 871  Q
     ||||||||||    
T  14827226 tcatggtgatt 14827236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 525
Target Start/End: Original strand, 6298926 - 6298985
Alignment:
Q  466 caccacttatagttacagacaactgagttgtagttaaatatataagtaatcgtttaaata 525  Q
    ||||||||||||| | |||||||| | || ||||||||||||| |||||| |||||||||    
T  6298926 caccacttatagtaagagacaactaaattatagttaaatatatgagtaatggtttaaata 6298985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 597
Target Start/End: Original strand, 11673478 - 11673525
Alignment:
Q  551 catttacctatggataatgca-aattgacagcaaaattgttgtctttc 597  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  11673478 catttacttatggataatgcataattgacagcaaaattgatgtctttc 11673525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 4e-65; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 618 - 876
Target Start/End: Complemental strand, 15606278 - 15606020
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    |||||||||||||| ||| || |  || ||||||||| ||||||||||| | ||||| |||||||||||||  |||||| |||||| |||||||||||||    
T  15606278 gtgcaatgtggatgccgcatttcacgatcgtaaccatattacatctttttcgtgttgtgttagagactcccatgggcaacttattcgggctcaaacaaaa 15606179  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||| | ||| |||| |||||||||||||||||||||||| | |||||||||||||| ||||| |||| ||||| ||||| |||||||||||||||||||     
T  15606178 tggcagcgggaaaacatgacagttttggagggggaggcagtagccttactcgatgccattcactttgttgatgggaacaaatgggaccgggttgtcttca 15606079  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaa 876  Q
    |||| || || |||||| |||||||||||||||||||||| || |||||||||| ||||    
T  15606078 agtccgactcagctactctagtgcaagctctatcgtctctaggtcatggtgattcagaa 15606020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 635 - 895
Target Start/End: Original strand, 28107059 - 28107320
Alignment:
Q  635 cgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatat 734  Q
    |||||| ||| |||||||||||||||||||| |  ||||| |||||||||||||| || |||||||||||||||||||| |||||| | |||| | ||||    
T  28107059 cgttccatgatcgtaaccatcttacatctttcgtgtgttgtgttagagactcccgtggacaatttattcaggctcaaacgaaatggcagcggacagatat 28107158  T
Q  735 gacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctact 834  Q
    |||||||||||||||||||||| | |||||||| ||||| ||||| |||||  || |||| |||||||| |  ||||||||||||||| | || ||||||    
T  28107159 gacagttttggagggggaggcagtagccttacttgatgccattcactttgcaaatatgaatagatgggatcacgttgtcttcgagtctaactccgctact 28107258  T
Q  835 ttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
     ||||||||||||||||||||| |||||||||||||| |||||| |||| || |||||||||    
T  28107259 ctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgttattgtttctag 28107320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 708 - 883
Target Start/End: Complemental strand, 19691073 - 19690898
Alignment:
Q  708 tcaaacaaaatggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgg 807  Q
    |||||| |||||  |||||| ||||||||| |||||||| ||||||||||| |||||| ||||||  ||||| |||||||||||||||||||| |||||     
T  19691073 tcaaacgaaatgacaacggacaaatatgaccgttttggaaggggaggcaatagccttattcgatgtcattcactttgctgatgtgaacagatgtgaccga 19690974  T
Q  808 gttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatg 883  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||    
T  19690973 gttgtcttcgagtctgactcagctactttagtgcaagctctatcgtctctgagtcatggtgatttggaattctatg 19690898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 692 - 895
Target Start/End: Complemental strand, 30802201 - 30801997
Alignment:
Q  692 ggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgt 791  Q
    |||||||||||| |||| ||||||||||| | |||  ||||||||||||||||| |||||||||| | |||||||| ||||| ||| | ||||| |||||    
T  30802201 ggcaatttattcgggcttaaacaaaatggcagcgggcaaatatgacagttttggtgggggaggcagtagccttactagatgccatttactttgcagatgt 30802102  T
Q  792 gaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtt 890  Q
    ||| | |||||||  ||||||||||||||| ||||| ||||||||||||||||||||||||| || | |||||||||| || ||||| |||| || ||||    
T  30802101 gaaaaaatgggactaggttgtcttcgagtccgattcagctactttagtgcaagctctatcgtttccgagccatggtgacttggaattctatgttattgtt 30802002  T
Q  891 tctag 895  Q
    |||||    
T  30802001 tctag 30801997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 618 - 895
Target Start/End: Original strand, 14680062 - 14680343
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggg---gcaatttattcaggctcaaaca 714  Q
    |||||||||||||  |||||||| |||||| |||||  ||||||||||||||||||| |||||||||||||| ||   ||||||||||  ||||||||      
T  14680062 gtgcaatgtggataccgcgttccatgaccgcaaccacattacatcttttgcatgttgtgttagagactcccgcggcgggcaatttattatggctcaaatg 14680161  T
Q  715 aaatggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtct 814  Q
    |||||| | ||| ||||||||||||| ||||||||||||||| | ||||||||||| ||  |||| | ||||||||  ||||||||| |||| |||||||    
T  14680162 aaatggcagcgggaaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactctgctgatgcaaacagatggaaccgagttgtct 14680261  T
Q  815 tcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    | || || || ||  ||||| || ||||||||||||| |||| ||||  |||||||| | |||| | ||||| |||||||||    
T  14680262 ttgattccgactcgtctactctattgcaagctctatcatctccgggcagtggtgattcaaaattctctgctattgtttctag 14680343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 647 - 885
Target Start/End: Complemental strand, 15053430 - 15053192
Alignment:
Q  647 gtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttgga 746  Q
    |||||||||||||||||||||| ||||| |||||||||| | | || |||||||||| ||||||||||| |||  | |||  |||||||| ||| |||||    
T  15053430 gtaaccatcttacatcttttgcgtgttgtgttagagacttcagtggacaatttattcgggctcaaacaagatgacagcgggtaaatatgatagtgttgga 15053331  T
Q  747 gggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagct 846  Q
    |||||||||| | |||||||||||||| ||||   ||||||| ||||| | ||| |||  ||||||||||||||| || || |||||| |||||||| |     
T  15053330 gggggaggcagtagccttactcgatgccattcgccttgctgacgtgaaaaaatgagacaaggttgtcttcgagtccgactcagctactctagtgcaaacg 15053231  T
Q  847 ctatcgtctctgggccatggtgatttagaattttatgct 885  Q
    |||||||||  ||||||||||||||  ||||| ||||||    
T  15053230 ctatcgtcttcgggccatggtgattcggaattctatgct 15053192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 660 - 871
Target Start/End: Complemental strand, 29368296 - 29368087
Alignment:
Q  660 atcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggagggggaggcaatc 759  Q
    ||||||||| ||||| ||| ||||||| || || ||||||||||  |||||||  |||||| | |||| ||||||||||||||||||||||||||||||     
T  29368296 atcttttgcgtgttgtgtttgagactctcgtggacaatttattc--gctcaaaagaaatggcagcggataaatatgacagttttggagggggaggcaata 29368199  T
Q  760 gccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgg 859  Q
     |||||||||| ||  |||| ||||||||||  || ||||||||||    ||| |||||||| || ||  ||||| ||||||||||||||||||||| ||    
T  29368198 tccttactcgaggcccttcactttgctgatgctaatagatgggacctaactgttttcgagtccgactcatctactatagtgcaagctctatcgtctccgg 29368099  T
Q  860 gccatggtgatt 871  Q
    | ||| ||||||    
T  29368098 gtcatagtgatt 29368087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 695 - 868
Target Start/End: Complemental strand, 11731873 - 11731703
Alignment:
Q  695 aatttattcaggctcaaacaaaatggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaa 794  Q
    ||||||| | |||||||||||||||| | |||  |||||||||||||||||||||| |||||   ||||  |||||  || |||| |||||||||| |||    
T  11731873 aatttatccgggctcaaacaaaatggcagcgggcaaatatgacagttttggagggg-aggcagcagcct--ctcgagactcttcactttgctgatgagaa 11731777  T
Q  795 cagatgggaccgggttgtcttcgagtctgattctgctactttagtgcaagctctatcgtctctgggccatggtg 868  Q
    || || ||| | ||||||||||||||| || |||   | | ||||||||||||||| ||||| |||||||||||    
T  11731776 catataggaacaggttgtcttcgagtccgactctttcaatatagtgcaagctctattgtctccgggccatggtg 11731703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 829 - 887
Target Start/End: Complemental strand, 34104538 - 34104480
Alignment:
Q  829 gctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    |||||| |||||||||| |||||||||| || ||||||||||| |||||||||||||||    
T  34104538 gctactctagtgcaagcgctatcgtctccggaccatggtgattcagaattttatgctat 34104480  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 829 - 895
Target Start/End: Original strand, 27443045 - 27443111
Alignment:
Q  829 gctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||||| ||||||| || ||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  27443045 gctactctagtgca-gcgctatcgtctctaggccatggtgattcagaattttatgctattgtttctag 27443111  T

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Target: scaffold0446 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 618 - 871
Target Start/End: Original strand, 89 - 342
Alignment:
Q  618 gtgcaatgtggatgtcgcgttccttgaccgtaaccatcttacatcttttgcatgttgggttagagactcccgggggcaatttattcaggctcaaacaaaa 717  Q
    ||||||||||||||||| ||| | ||||||| | ||| |   |||||| || |||||  ||||||||||||| |||||||| |||| ||||||||| |||    
T  89 gtgcaatgtggatgtcgtgtttcatgaccgtcaacatatacnatctttcgcgtgttgttttagagactcccgtgggcaattcattcgggctcaaacgaaa 188  T
Q  718 tggaaacggaaaaatatgacagttttggagggggaggcaatcgccttactcgatgctattcaatttgctgatgtgaacagatgggaccgggttgtcttcg 817  Q
    ||  ||||   |||||||||||||| ||||||||||||| | |||||||||||||| ||||| ||||||| || ||| | ||||||||||||||||||||    
T  189 tgacaacgagcaaatatgacagtttgggagggggaggcagttgccttactcgatgccattcactttgctgttgggaatatatgggaccgggttgtcttcg 288  T
Q  818 agtctgattctgctactttagtgcaagctctatcgtctctgggccatggtgatt 871  Q
    |||| || || |||||| |||||||||| ||||| ||||  | |||||||||||    
T  289 agtccgactcagctactctagtgcaagcgctatcatctccagaccatggtgatt 342  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 829 - 895
Target Start/End: Complemental strand, 44316 - 44250
Alignment:
Q  829 gctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgcta-tgtttctag 895  Q
    |||||| ||||||| || ||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  44316 gctactctagtgca-gcgctatcgtctctaggccatggtgattcagaattttatgctattgtttctag 44250  T

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Target: scaffold1175 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1175
Description:

Target: scaffold1175; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 826 - 887
Target Start/End: Original strand, 489 - 550
Alignment:
Q  826 tctgctactttagtgcaagctctatcgtctctgggccatggtgatttagaattttatgctat 887  Q
    ||||||||||| |||||||||||| |||||  |||||||| | ||||||||||||| |||||    
T  489 tctgctacttttgtgcaagctctaccgtcttcgggccatgataatttagaattttacgctat 550  T

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