View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5013-Insertion-2 (Length: 769)
Name: NF5013-Insertion-2
Description: NF5013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5013-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-154; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 412 - 731
Target Start/End: Complemental strand, 36343917 - 36343597
Alignment:
| Q |
412 |
cgaagagataatatatggaaggggctctagggatacatttacacgaatatgagcatcacctttttaataacctgtctgttttttactatgatttttgtga |
511 |
Q |
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| T |
36343917 |
cgaagagataatatatgcaaggggtgctagggatacatttacacgaatatgaacatcacctttttattaacctgtctgttttttactatgatttttgtga |
36343818 |
T |
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| Q |
512 |
ttgtattgactgtagtaaatattttaatgggagtataagctgttttgaggagcacgcttatcatcatgagtgctttctctttagctaactcctcatatag |
611 |
Q |
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| T |
36343817 |
ttgtattgactgtggtaaataattttatgggagtataagctgttttgaggagcacgcttatcatcatgagtgctttctctttagctaactcctcatatag |
36343718 |
T |
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| Q |
612 |
attgagtggtgtttaaagctctgtccagaattagttgagattggagttacgcacacctccatatgatataaaaattattg-tttggtttagttaaatctt |
710 |
Q |
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| T |
36343717 |
attgagtggtgtttaaagctctgtccagaattagttgagattggagttacgcacacctccatatgatataaaaattattgttttggtttagttaaatctt |
36343618 |
T |
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| Q |
711 |
gtggataattttttagattat |
731 |
Q |
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|||||| |||||||||||||| |
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| T |
36343617 |
gtggatgattttttagattat |
36343597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 114 - 334
Target Start/End: Complemental strand, 36344256 - 36344037
Alignment:
| Q |
114 |
actaccaatgatgttttttaaacaatccaacttgtctgaggttgtagttaacccaagatcctgttcgcagggtgaacttacttggtgttgccacatttcc |
213 |
Q |
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| T |
36344256 |
actaccaatgatgttttttaaacaatccaacttgtctgaggttgttgttaacccaagatcctgttcgcagggtgaacctacttggtgttgctacatttcc |
36344157 |
T |
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| Q |
214 |
aatgacataaagagattaaactgaggagctgtattaatattgtatggtaacacgaataaatgcggtttgtttgtatataattttgtgactcctatggcta |
313 |
Q |
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| T |
36344156 |
aatgacataaagagattaaactgaggagctgtattaatattgtatggtaacacgaataaatgcggtctgcttgtctattattttgtgactccta-ggcta |
36344058 |
T |
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| Q |
314 |
ccgttcctgaacttacttgta |
334 |
Q |
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| T |
36344057 |
ccgttcctgaacttacttgta |
36344037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 38107005 - 38107127
Alignment:
| Q |
116 |
taccaatgatgttttttaaacaatccaacttgtctgaggttgtagttaacccaagatcctgttcgcagggtgaacttacttggtgttgccacatttccaa |
215 |
Q |
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| T |
38107005 |
taccaatgatgttttttaa-caatccaacttgtctgaggttgtagttaacccaagatcctgttcgcagggtgaacctacttggtgttgctacatttccaa |
38107103 |
T |
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| Q |
216 |
tgacataaagagattaaactgagg |
239 |
Q |
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| T |
38107104 |
tgacataaagagattaaactgagg |
38107127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 675
Target Start/End: Original strand, 38107850 - 38107919
Alignment:
| Q |
606 |
atatagattgagtggtgtttaaagctctgtccagaattagttgagattggagttacgcacacctccatat |
675 |
Q |
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| T |
38107850 |
atatagattgagtggtgtttaaagccctgttgaaaatatattgagattcgggttacgcacacctccatat |
38107919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 36344008 - 36343973
Alignment:
| Q |
328 |
acttgtaattgagaagttccatttgaaactttccaa |
363 |
Q |
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| T |
36344008 |
acttctaattgagaagttccatttgaaactttccaa |
36343973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 14726957 - 14726922
Alignment:
| Q |
206 |
acatttccaatgacataaagagattaaactgaggag |
241 |
Q |
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| T |
14726957 |
acatttccaatgacatgaagagattaaactgaggag |
14726922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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