View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5013-Insertion-4 (Length: 137)

Name: NF5013-Insertion-4
Description: NF5013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5013-Insertion-4
NF5013-Insertion-4
[»] chr2 (3 HSPs)
chr2 (7-137)||(7135644-7135774)
chr2 (6-66)||(24584618-24584678)
chr2 (11-66)||(39287848-39287903)
[»] scaffold0113 (1 HSPs)
scaffold0113 (12-66)||(13276-13330)
[»] chr8 (1 HSPs)
chr8 (12-66)||(42855031-42855085)
[»] chr1 (1 HSPs)
chr1 (12-66)||(45833770-45833824)
[»] chr6 (2 HSPs)
chr6 (5-66)||(9705985-9706046)
chr6 (6-66)||(20428649-20428709)
[»] chr7 (2 HSPs)
chr7 (6-66)||(32629818-32629878)
chr7 (6-66)||(36870336-36870396)
[»] chr5 (2 HSPs)
chr5 (6-66)||(24177734-24177794)
chr5 (7-66)||(35685068-35685126)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 1e-51; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 7135644 - 7135774
Alignment:
Q  7 agggttttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaacaaagtgattctaatttctctatggttttcttatctaggg 106  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||     
T  7135644 agggttttccacaaaatttctttaggaactctatcacacgtcttcttcaaatcaatgaaacaaagtggttctaacttctctatggttttcttatctagga 7135743  T
Q  107 ctttcttcaaatcaaatcaattctaacttct 137  Q
    ||||||| |||||||||||||||||||||||    
T  7135744 ctttcttgaaatcaaatcaattctaacttct 7135774  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 24584618 - 24584678
Alignment:
Q  6 cagggttttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    |||||||||||||||||| ||||| |||||||||||| | | ||||| |||||||||||||    
T  24584618 cagggttttccacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaa 24584678  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 39287848 - 39287903
Alignment:
Q  11 ttttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    |||||||| |||| |||||||  ||| ||||||||||||||| |||||||||||||    
T  39287848 ttttccactaaatctctctagccactttatcacatgtcttctccaaatcaatgaaa 39287903  T

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Target: scaffold0113 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 13276 - 13330
Alignment:
Q  12 tttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    |||||||||||| ||||||| |||||||||| | | ||||| |||||||||||||    
T  13276 tttccacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaa 13330  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 42855031 - 42855085
Alignment:
Q  12 tttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    |||||||||||| |||||||  ||||||||| ||| ||||| |||||||||||||    
T  42855031 tttccacaaaatatctctaggcactctatcatatgccttctccaaatcaatgaaa 42855085  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 45833824 - 45833770
Alignment:
Q  12 tttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    |||||||||||| |||||||| ||||||||  | | |||||||||||||||||||    
T  45833824 tttccacaaaatatctctagacactctatcgtacgccttcttcaaatcaatgaaa 45833770  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 9706046 - 9705985
Alignment:
Q  5 acagggttttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    |||||| |||||||||||| |||||||  ||||||||| | | ||||| |||||||||||||    
T  9706046 acagggctttccacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaa 9705985  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 20428649 - 20428709
Alignment:
Q  6 cagggttttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    ||||| |||||||||||| |||||||  ||||||||| | | ||||| |||||||||||||    
T  20428649 cagggctttccacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaa 20428709  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 32629878 - 32629818
Alignment:
Q  6 cagggttttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    ||||| |||||||||||| |||||||  ||||||||| | | ||||| |||||||||||||    
T  32629878 cagggctttccacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaa 32629818  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 36870336 - 36870396
Alignment:
Q  6 cagggttttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    ||||| |||||||||||| |||||||  ||||||||| | | ||||| |||||||||||||    
T  36870336 cagggctttccacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaa 36870396  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 24177794 - 24177734
Alignment:
Q  6 cagggttttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    ||||| |||||||||||| ||||| |  ||||||||| ||| ||| |||||||||||||||    
T  24177794 cagggctttccacaaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaa 24177734  T

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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 35685126 - 35685068
Alignment:
Q  7 agggttttccacaaaatttctctagaaactctatcacatgtcttcttcaaatcaatgaaa 66  Q
    |||||| ||||||||| | |||||  |||||||||||| ||||||| |||||||||||||    
T  35685126 agggttgtccacaaaact-ctctatgaactctatcacaagtcttctccaaatcaatgaaa 35685068  T

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