View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5013_high_1 (Length: 283)

Name: NF5013_high_1
Description: NF5013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5013_high_1
NF5013_high_1
[»] chr6 (3 HSPs)
chr6 (1-275)||(31108938-31109208)
chr6 (3-83)||(33242519-33242595)
chr6 (3-85)||(27441658-27441736)
[»] chr3 (6 HSPs)
chr3 (3-86)||(4190170-4190249)
chr3 (3-85)||(10457798-10457876)
chr3 (3-56)||(34791945-34791994)
chr3 (3-59)||(9434240-9434292)
chr3 (14-88)||(19148895-19148965)
chr3 (3-89)||(51757709-51757790)
[»] chr2 (11 HSPs)
chr2 (3-93)||(18491821-18491907)
chr2 (3-87)||(34895645-34895725)
chr2 (3-89)||(41281876-41281958)
chr2 (3-59)||(11825586-11825638)
chr2 (3-87)||(12531567-12531647)
chr2 (3-90)||(43114673-43114756)
chr2 (1-87)||(6518398-6518480)
chr2 (3-59)||(966766-966818)
chr2 (3-59)||(4299352-4299404)
chr2 (3-83)||(16804084-16804160)
chr2 (3-83)||(16843366-16843442)
[»] chr1 (9 HSPs)
chr1 (3-89)||(35003410-35003492)
chr1 (3-59)||(45705941-45705993)
chr1 (3-86)||(26585578-26585657)
chr1 (3-65)||(41065267-41065325)
chr1 (3-57)||(48119744-48119794)
chr1 (3-83)||(35000021-35000097)
chr1 (3-59)||(44112793-44112845)
chr1 (3-83)||(45639640-45639716)
chr1 (3-84)||(45427652-45427729)
[»] chr7 (5 HSPs)
chr7 (3-84)||(40237035-40237112)
chr7 (3-87)||(31513403-31513483)
chr7 (3-87)||(31408537-31408617)
chr7 (3-87)||(33384987-33385067)
chr7 (3-85)||(27535137-27535215)
[»] chr4 (10 HSPs)
chr4 (3-84)||(19880070-19880147)
chr4 (3-83)||(55272284-55272360)
chr4 (3-65)||(960796-960854)
chr4 (3-59)||(712076-712128)
chr4 (3-59)||(35037121-35037173)
chr4 (3-56)||(17619087-17619136)
chr4 (3-59)||(38851629-38851681)
chr4 (6-90)||(46827607-46827687)
chr4 (3-83)||(48435487-48435563)
chr4 (37-86)||(32728503-32728552)
[»] chr5 (2 HSPs)
chr5 (3-65)||(17208190-17208248)
chr5 (3-83)||(30622627-30622703)
[»] chr8 (3 HSPs)
chr8 (3-83)||(10678060-10678136)
chr8 (3-59)||(35181632-35181684)
chr8 (3-85)||(34304904-34304981)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-85)||(45625-45703)
[»] scaffold0100 (1 HSPs)
scaffold0100 (3-65)||(35382-35440)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 31109208 - 31108938
Alignment:
Q  1 tcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttttttatatacattag 100  Q
    ||||||||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31109208 tcttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacataggggtgcacatgtgtcaacactcttttttatatacattag 31109113  T
Q  101 aggctttaatacagctctcgtccnnnnnnnnnngaacaaaaccacagttttgatctccttattttcaattgcgcaaattacattgaccaatctatgattt 200  Q
    |||||||||||||||||||||||          | |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31109112 aggctttaatacagctctcgtccttttttttttggacaaaaccgcagttttgatctccttattttcaattgcgcaaatgacattgaccaatctatgattt 31109013  T
Q  201 tgaacatccaatttaatgacattgtaatatattcatatgaaaacaaagagcaaatgatagtatcaagagtataat 275  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31109012 tgaacatccaatttaataacattgtaatatattcatatgaaaacaaagagcaaatgatagtatcaagagtataat 31108938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 33242519 - 33242595
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 83  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| |||||    
T  33242519 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 33242595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 27441658 - 27441736
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctt 85  Q
    ||||||||| |||||||||||||| |||||    ||||||||||||||||||||||| || ||  |||||| ||| |||||||    
T  27441658 ttccttgccacatgtcaggattttatgtgg----gtgtaagaggtgtattgccacatgggtgtgtacatgtatcaccactctt 27441736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 4190249 - 4190170
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttt 86  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||| ||||| |||||| ||| ||||||||    
T  4190249 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacataagggtatacatgtatcaccactcttt 4190170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 10457876 - 10457798
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctt 85  Q
    ||||||||| ||||||||||||||||||||||||    |||||||||||||||||||  ||||| |||||| |||||||||||    
T  10457876 ttccttgccacatgtcaggattttgtgtggatgt----aagaggtgtattgccacatgagggtatacatgtatcaacactctt 10457798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 34791945 - 34791994
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgcca 56  Q
    ||||||||| |||||||||||||||||||||    |||||||||||||||||||    
T  34791945 ttccttgccacatgtcaggattttgtgtgga----tgtaagaggtgtattgcca 34791994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 9434240 - 9434292
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 59  Q
    ||||||||| |||||||| |||||||||||    |||||||||||||||||||||||    
T  9434240 ttccttgccacatgtcagaattttgtgtgg----gtgtaagaggtgtattgccacat 9434292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 19148895 - 19148965
Alignment:
Q  14 atgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttttt 88  Q
    ||||||| |||||||||||    ||||||| ||||||||||||||| |||||  |||||||||| || |||||||    
T  19148895 atgtcagaattttgtgtgg----gtgtaagtggtgtattgccacatgggggtgtacatgtgtcaccattcttttt 19148965  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 51757709 - 51757790
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttttt 89  Q
    ||||||||| |||||||||||| |||||||    ||||||||||| ||||||||||| |||||  |||||| ||| ||||| |||||    
T  51757709 ttccttgccacatgtcaggattgtgtgtgg----gtgtaagaggtatattgccacat-ggggtgtacatgtatcaccactcattttt 51757790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 18491821 - 18491907
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttttttatat 93  Q
    ||||||||| ||||| ||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| |||||||||||||||    
T  18491821 ttccttgccacatgttaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactcttttttatat 18491907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 34895725 - 34895645
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 87  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| |||||||||    
T  34895725 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactctttt 34895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 41281958 - 41281876
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttttt 89  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||||||| || |||||  |||||| ||| |||||||||||    
T  41281958 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccatatgggggtgtacatgtatcaccactctttttt 41281876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 11825638 - 11825586
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 59  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||    
T  11825638 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacat 11825586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 12531647 - 12531567
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 87  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||||||| || | |||  |||||| ||| |||||||||    
T  12531647 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccatatggaggtgtacatgtatcatcactctttt 12531567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 43114673 - 43114756
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttttta 90  Q
    ||||||||| | ||||||||||||||||||    |||||||||||||||||||||||  ||||  |||||| ||| ||||| ||||||    
T  43114673 ttccttgccacttgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgagggtgtacatgtatcaccactcattttta 43114756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6518480 - 6518398
Alignment:
Q  1 tcttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 87  Q
    ||||||||||| ||||||||||||||||||||    |||||| |||||||||| ||||| | |||  |||||| ||| |||||||||    
T  6518480 tcttccttgccacatgtcaggattttgtgtgg----gtgtaaaaggtgtattgacacatggaggtgtacatgtatcaccactctttt 6518398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 966818 - 966766
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 59  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||| ||||||    
T  966818 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtatttccacat 966766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 4299404 - 4299352
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 59  Q
    ||||||||| ||||||||||||||||||||    ||||||||| |||||||||||||    
T  4299404 ttccttgccacatgtcaggattttgtgtgg----gtgtaagagatgtattgccacat 4299352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 16804084 - 16804160
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 83  Q
    ||||||||| |||||||| |||||||||||    ||||||||||||||||| || ||||||||  |||||| ||| |||||    
T  16804084 ttccttgccacatgtcagaattttgtgtgg----gtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactc 16804160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 16843366 - 16843442
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 83  Q
    ||||||||| |||||||| |||||||||||    ||||||||||||||||| || ||||||||  |||||| ||| |||||    
T  16843366 ttccttgccacatgtcagaattttgtgtgg----gtgtaagaggtgtattgtcatataggggtgtacatgtatcaccactc 16843442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 35003410 - 35003492
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttttt 89  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||   ||||| ||| |||||||||||    
T  35003410 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtgcatgtatcaccactctttttt 35003492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 45705941 - 45705993
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 59  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||    
T  45705941 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacat 45705993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 26585578 - 26585657
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttt 86  Q
    ||||||||| |||||||||||||||||||||    |||||||| ||||||||| ||| |||||  |||||| ||| ||||||||    
T  26585578 ttccttgccacatgtcaggattttgtgtgga----tgtaagagatgtattgccgcatgggggtgtacatgtatcaccactcttt 26585657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 41065267 - 41065325
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggt 65  Q
    ||||||||| ||||||||||||||||| |||    |||||||||||||||||||||| |||||    
T  41065267 ttccttgccacatgtcaggattttgtgcgga----tgtaagaggtgtattgccacatgggggt 41065325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 48119744 - 48119794
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccac 57  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||||||||    
T  48119744 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccac 48119794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 35000097 - 35000021
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 83  Q
    ||||||||| |||||||||||||||| |||    ||||||||| ||||||||||||| |||||  |||||| ||| |||||    
T  35000097 ttccttgccacatgtcaggattttgtatgg----gtgtaagagatgtattgccacatgggggtgtacatgtatcaccactc 35000021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 44112793 - 44112845
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 59  Q
    ||||||||| |||||||| |||||||||||    |||||||||||||||||||||||    
T  44112793 ttccttgccacatgtcagaattttgtgtgg----gtgtaagaggtgtattgccacat 44112845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 45639716 - 45639640
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 83  Q
    ||||||||| ||||| ||||||||||||||    ||||||||||||||||||||||  |||||  |||||| ||| |||||    
T  45639716 ttccttgccacatgttaggattttgtgtgg----gtgtaagaggtgtattgccacaagggggtgtacatgtatcaccactc 45639640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 45427729 - 45427652
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactct 84  Q
    |||||| || |||||||||||||||||||||||     ||||||||||||||||||| ||| |  |||||| ||| ||||||    
T  45427729 ttccttaccacatgtcaggattttgtgtggatgg----aagaggtgtattgccacatggggatgtacatgtatcaccactct 45427652  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 40237035 - 40237112
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactct 84  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| ||||||    
T  40237035 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 40237112  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 31513403 - 31513483
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 87  Q
    ||||||||| |||||||||||||||||| |||||    |||||||||||||||||||| ||||  |||||| ||| |||||||||    
T  31513403 ttccttgccacatgtcaggattttgtgtagatgt----aagaggtgtattgccacataagggtgtacatgtatcaccactctttt 31513483  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 31408617 - 31408537
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 87  Q
    ||||||||| |||||||||||||| |||||    ||||||||||||||||| ||||| |||||  |||||| ||| |||||||||    
T  31408617 ttccttgccacatgtcaggattttatgtgg----gtgtaagaggtgtattgtcacatgggggtgtacatgtatcaccactctttt 31408537  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 33384987 - 33385067
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttt 87  Q
    ||||||||| ||| |||||||||||| |||    ||||||||||||||||| ||||| |||||  |||||| ||| |||||||||    
T  33384987 ttccttgccacatatcaggattttgtatgg----gtgtaagaggtgtattgtcacatgggggtttacatgtatcaccactctttt 33385067  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 27535215 - 27535137
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctt 85  Q
    ||||||||| |||||||| ||||||||||||    |||||||| ||||||||||||| | || | |||||| ||| |||||||    
T  27535215 ttccttgccacatgtcagaattttgtgtgga----tgtaagagatgtattgccacatggaggaatacatgtatcaccactctt 27535137  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 19880070 - 19880147
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactct 84  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| ||||||    
T  19880070 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactct 19880147  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 55272360 - 55272284
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 83  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| |||||    
T  55272360 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 55272284  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 960854 - 960796
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggt 65  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||||| |||||||||||    
T  960854 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgtcacataggggt 960796  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 712076 - 712128
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 59  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||    
T  712076 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacat 712128  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 35037121 - 35037173
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 59  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||    
T  35037121 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacat 35037173  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 17619136 - 17619087
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgcca 56  Q
    ||||||||| ||||||||||||||||||||    ||||||||||||||||||||    
T  17619136 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgcca 17619087  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 38851629 - 38851681
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 59  Q
    ||||||||| |||||||||||||||||||||    |||||||| |||||||||||||    
T  38851629 ttccttgccacatgtcaggattttgtgtgga----tgtaagagatgtattgccacat 38851681  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 46827687 - 46827607
Alignment:
Q  6 cttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctttttta 90  Q
    |||||| ||||||||||||||||||||    ||||||||| |||||| |||||| | |||  |||||| ||| ||||||||||||    
T  46827687 cttgccacatgtcaggattttgtgtgg----gtgtaagagatgtatttccacatggaggtgtacatgtatcaccactctttttta 46827607  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 48435563 - 48435487
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 83  Q
    ||||||||| ||||||||||||||||||||    ||||||||| ||||||| ||||| |||||  |||||| ||| |||||    
T  48435563 ttccttgccacatgtcaggattttgtgtgg----gtgtaagagatgtattgtcacatgggggtgtacatgtatcaccactc 48435487  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 32728503 - 32728552
Alignment:
Q  37 gtgtaagaggtgtattgccacataggggtacacatgtgtcaacactcttt 86  Q
    ||||||||||||||||||||||| |||||  |||||| ||| ||||||||    
T  32728503 gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactcttt 32728552  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 17208190 - 17208248
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggt 65  Q
    ||||||||| |||||||||||||||||||||    |||||||||||||||| |||||||||||    
T  17208190 ttccttgccacatgtcaggattttgtgtgga----tgtaagaggtgtattgtcacataggggt 17208248  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 30622703 - 30622627
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 83  Q
    ||||||||| |||||||  |||||||||||    ||||||||||||||||||||||| |||||  |||||| ||| |||||    
T  30622703 ttccttgccacatgtcaaaattttgtgtgg----gtgtaagaggtgtattgccacatgggggtgtacatgtatcaccactc 30622627  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 10678136 - 10678060
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactc 83  Q
    ||||||||| ||||||||||||||||||||    ||||||||| ||||||||||||| |||||  |||||| ||| |||||    
T  10678136 ttccttgccacatgtcaggattttgtgtgg----gtgtaagagatgtattgccacatgggggtgtacatgtatcaccactc 10678060  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 35181632 - 35181684
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacat 59  Q
    ||||||||| ||||||||||||||||||||    |||||||||||||||||||||||    
T  35181632 ttccttgccacatgtcaggattttgtgtgg----gtgtaagaggtgtattgccacat 35181684  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 34304904 - 34304981
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctt 85  Q
    ||||||||| |||||||||||||||| |||    ||||||||||||||||||||||| |||||  |||||| ||| |||||||    
T  34304904 ttccttgccacatgtcaggattttgtttgg----gtgtaagaggtgtattgccacat-ggggtgtacatgtatcaccactctt 34304981  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 45703 - 45625
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggtacacatgtgtcaacactctt 85  Q
    ||||||||| |||||||||||||| |||||    ||||||||||||||||||||||| || ||  |||||| ||| |||||||    
T  45703 ttccttgccacatgtcaggattttatgtgg----gtgtaagaggtgtattgccacatgggtgtgtacatgtatcaccactctt 45625  T

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Target: scaffold0100 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 35440 - 35382
Alignment:
Q  3 ttccttgccccatgtcaggattttgtgtggatgtgtgtaagaggtgtattgccacataggggt 65  Q
    ||||||||| |||||| ||||||||| |||    ||||||||||||||||||||||| |||||    
T  35440 ttccttgccgcatgtctggattttgtatgg----gtgtaagaggtgtattgccacatgggggt 35382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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