View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5013_low_3 (Length: 244)
Name: NF5013_low_3
Description: NF5013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5013_low_3 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 243731 - 243485
Alignment:
| Q |
11 |
tgcaataattaacgtatccaccaacgaaatttagaccatcatgcacaccaaattttcccctgaaattcggatacattgtttgta------------cgac |
98 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
243731 |
tgcaataattaacttatccaccaacgaaatttagaccatcatgcacaccaaattttcccctgaaattcggatacattgtttgtatcgcggggaacacgac |
243632 |
T |
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| Q |
99 |
gaagcaccatttgaacagttgccattcatgttgagactaaaaagcaattttctataatataagtctaattttacctata----aaaagtataatttgatt |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
243631 |
gaagcaccatttgaacagttgccattcatgttgagactaaaaagcaattttctataatataagtctaattttacctataaaaaaaaagtataatttgatt |
243532 |
T |
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| Q |
195 |
gagaattacttttacattctataatttctttaaaatcgtctctattt |
241 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
243531 |
aagaattacttttacattttatgatttctttaaaatcgtctctattt |
243485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 14573645 - 14573891
Alignment:
| Q |
11 |
tgcaataattaacgtatccaccaacgaaatttagaccatcatgcacaccaaattttcccctgaaattcggatacattgtttgta------------cgac |
98 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14573645 |
tgcaataattaacttatccaccaacgaaatttagaccatcatgcacaccaaattttcccctgaaattcggatacattgtttgtatcgcggggaacacgac |
14573744 |
T |
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| Q |
99 |
gaagcaccatttgaacagttgccattcatgttgagactaaaaagcaattttctataatataagtctaattttacctat----aaaaagtataatttgatt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14573745 |
gaagcaccatttgaacagttgccattcatgttgagactaaaaagcaattttctataatataagtctaattttacctataaaaaaaaagtataatttgatt |
14573844 |
T |
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| Q |
195 |
gagaattacttttacattctataatttctttaaaatcgtctctattt |
241 |
Q |
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| T |
14573845 |
aagaattacttttacattttatgatttctttaaaatcgtctctattt |
14573891 |
T |
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