View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5013_low_4 (Length: 238)
Name: NF5013_low_4
Description: NF5013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5013_low_4 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 242868 - 242653
Alignment:
| Q |
1 |
tatagatttatcgaataatcattcgtttatcctttacctttaaggttccctat--cagctattttaaggttactaatgacttggattacataagtgactc |
98 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
242868 |
tatagatttattgaataatcattcgtttatcctttacctttaaggttccctatatcagctattttaaggttacttatgacttggattacataagtgactc |
242769 |
T |
|
| Q |
99 |
cttttctcatttgtaccattgaagtaacttcactaacctacttttcctaacaaagnnnnnnnnngggttaacagtgttttaccatcctataatataagtc |
198 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |
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| T |
242768 |
cttttctcatttgtaccactgaagtaacttcactaacctacttttcctaagaaagttttttttttggttaacagtgttttaccatcctgtaatataagtc |
242669 |
T |
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| Q |
199 |
atttctggttttaccc |
214 |
Q |
| |
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|||||||||||||||| |
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| T |
242668 |
atttctggttttaccc |
242653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 14574508 - 14574722
Alignment:
| Q |
1 |
tatagatttatcgaataatcattcgtttatcctttacctttaaggttccctat--cagctattttaaggttactaatgacttggattacataagtgactc |
98 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14574508 |
tatagatttattgaataatcattcgtttatcctttacctttaaggttccctatatcagctattttaaggttacttatgacttggattacataagtgactc |
14574607 |
T |
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| Q |
99 |
cttttctcatttgtaccattgaagtaacttcactaacctacttttcctaacaaagnnnnnnnnngggttaacagtgttttaccatcctataatataagtc |
198 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |
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| T |
14574608 |
cttttctcatttgtaccactgaagtaacttcactaacctacttttcctaagaaagttttttttt-ggttaacagtgttttaccatcctgtaatataagtc |
14574706 |
T |
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| Q |
199 |
atttctggttttaccc |
214 |
Q |
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|||||||||||||||| |
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| T |
14574707 |
atttctggttttaccc |
14574722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 16589352 - 16589307
Alignment:
| Q |
165 |
gttaacagtgttttaccatcctataatataagtcatttctggtttt |
210 |
Q |
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||||| ||||||||| | |||| ||||||||||||||||||||||| |
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| T |
16589352 |
gttaatagtgttttatcctcctgtaatataagtcatttctggtttt |
16589307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 12147908 - 12147959
Alignment:
| Q |
163 |
gggttaacagtgttttaccatcctataatataagtcatttctggttttaccc |
214 |
Q |
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| T |
12147908 |
gggttaatagtgttttaccaccctgtaatataggtcatttctggttttaccc |
12147959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 19110942 - 19110989
Alignment:
| Q |
163 |
gggttaacagtgttttaccatcctataatataagtcatttctggtttt |
210 |
Q |
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| T |
19110942 |
gggttaatagtgttttaccctcctgtaatataagtcatttccggtttt |
19110989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 25641112 - 25641084
Alignment:
| Q |
184 |
cctataatataagtcatttctggttttac |
212 |
Q |
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| T |
25641112 |
cctataatataagtcatttctggttttac |
25641084 |
T |
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