View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5013_low_5 (Length: 235)

Name: NF5013_low_5
Description: NF5013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5013_low_5
NF5013_low_5
[»] chr1 (4 HSPs)
chr1 (15-219)||(15304704-15304908)
chr1 (24-127)||(15308500-15308603)
chr1 (13-72)||(20618071-20618130)
chr1 (82-122)||(14526591-14526631)
[»] chr3 (2 HSPs)
chr3 (22-119)||(7566487-7566584)
chr3 (58-123)||(21822891-21822956)
[»] chr6 (1 HSPs)
chr6 (13-67)||(28609182-28609236)
[»] scaffold0098 (1 HSPs)
scaffold0098 (19-124)||(3277-3382)
[»] chr4 (1 HSPs)
chr4 (28-124)||(8718052-8718148)
[»] chr2 (2 HSPs)
chr2 (13-124)||(15583027-15583139)
chr2 (58-123)||(11536580-11536646)
[»] chr7 (2 HSPs)
chr7 (29-79)||(27128790-27128840)
chr7 (50-129)||(7395235-7395314)
[»] scaffold0070 (1 HSPs)
scaffold0070 (96-124)||(2797-2825)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 15304704 - 15304908
Alignment:
Q  15 attatactgaaaacataaatcgtatacaaccaatcagattaatagtactacatagatttgtagcttgttacatcaaatcctaacacaaaagagagtttag 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15304704 attatattgaaaacataaatcgtatacaaccaatcagattaatagtactacatagatttgtagctttttacatcaaatcctaacacaaaagagagtttag 15304803  T
Q  115 ttacccatgagatatgagatgcatgaccaacaaaggagagtttagttacctatcgtgatcaactgttttgaaaattggcataacttatctgcatggtcat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15304804 ttacccatgagatatgagatgcatgaccaacaaaggagagtttagttacctatcgtgatcaactgttttgaaaattggcataacttatctgcatggtcat 15304903  T
Q  215 gatac 219  Q
    |||||    
T  15304904 gatac 15304908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 15308500 - 15308603
Alignment:
Q  24 aaaacataaatcgtatacaaccaatcagattaatagtactacatagatttgtagcttgttacatcaaatcctaacacaaaagagagtttagttacccatg 123  Q
    |||| ||||||| |||||||| || |||||||| ||||||||||| |||  |||||   |||||| ||| | |||| |||||||||||||||||||||||    
T  15308500 aaaagataaatcatatacaacaaaccagattaagagtactacataaattcatagctatatacatctaattccaacataaaagagagtttagttacccatg 15308599  T
Q  124 agat 127  Q
    ||||    
T  15308600 agat 15308603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 20618071 - 20618130
Alignment:
Q  13 agattatactgaaaacataaatcgtatacaaccaatcagattaatagtactacatagatt 72  Q
    |||||||| ||||  |||||||| ||||||||||| |||||||| |||||||||||||||    
T  20618071 agattatattgaatccataaatcatatacaaccaaccagattaagagtactacatagatt 20618130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 14526631 - 14526591
Alignment:
Q  82 ttacatcaaatcctaacacaaaagagagtttagttacccat 122  Q
    ||||||| ||||| |||||||||||| ||||||||||||||    
T  14526631 ttacatccaatcccaacacaaaagagggtttagttacccat 14526591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 7566487 - 7566584
Alignment:
Q  22 tgaaaacataaatcgtatacaaccaatcagattaatagtactacatagatttgtagcttgttacatcaaatcctaacacaaaagagagtttagttacc 119  Q
    |||||||||||||| |||||||||| ||||||| | | |||||||||| ||  |||||  ||||||| ||||| ||||||  ||||||||||||||||    
T  7566487 tgaaaacataaatcatatacaaccagtcagatttagactactacataggttcctagctatttacatccaatcccaacacaggagagagtttagttacc 7566584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 21822956 - 21822891
Alignment:
Q  58 agtactacatagatttgtagcttgttacatcaaatcctaacacaaaagagagtttagttacccatg 123  Q
    |||||||||||||||  |||||  | ||||| |||||||||| || |||||||||| |||||||||    
T  21822956 agtactacatagattcctagctattcacatccaatcctaacaaaagagagagtttaattacccatg 21822891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 28609236 - 28609182
Alignment:
Q  13 agattatactgaaaacataaatcgtatacaaccaatcagattaatagtactacat 67  Q
    |||||||| ||||  |||||||| |||||||||||||||||||||||||||||||    
T  28609236 agattatattgaatgcataaatcatatacaaccaatcagattaatagtactacat 28609182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 3382 - 3277
Alignment:
Q  19 tactgaaaacataaatcgtatacaaccaatcagattaatagtactacatagatttgtagcttgttacatcaaatcctaacacaaaagagagtttagttac 118  Q
    |||||| |||||||||| |||| | |||  |  ||||| |||||||||||||||| || ||  ||||||| ||||| |||| |||||| |||||||||||    
T  3382 tactgagaacataaatcatatatatccagccgaattaagagtactacatagatttctacctatttacatccaatcccaacataaaagaaagtttagttac 3283  T
Q  119 ccatga 124  Q
    ||||||    
T  3282 ccatga 3277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 8718052 - 8718148
Alignment:
Q  28 cataaatcgtatacaaccaatcagattaatagtactacatagatttgtagcttgttacatcaaatcctaacacaaaagagagtttagttacccatga 124  Q
    ||||||||| |||||||||  || ||||| |||||| |||| | |  || ||  ||||||| ||||| |||||||||||||||||||||||||||||    
T  8718052 cataaatcgaatacaaccagccatattaagagtactgcataaaatcctaactatttacatccaatcccaacacaaaagagagtttagttacccatga 8718148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 15583027 - 15583139
Alignment:
Q  13 agattatactgaaaacataaatcgtatacaaccaatcagattaatagtactacatagatttgtagct-tgttacatcaaatcctaacacaaaagagagtt 111  Q
    |||||||| | || ||||||||| ||||||||||  || ||||| || |||||| ||| || ||||| | ||||||| ||||  ||||||||||||||||    
T  15583027 agattatatttaatacataaatcatatacaaccacccatattaagagcactacaaagaattctagctatcttacatctaatctcaacacaaaagagagtt 15583126  T
Q  112 tagttacccatga 124  Q
    |||||||| ||||    
T  15583127 tagttaccaatga 15583139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 11536580 - 11536646
Alignment:
Q  58 agtactacatagatttgtagct-tgttacatcaaatcctaacacaaaagagagtttagttacccatg 123  Q
    |||| ||||||||||  ||||| | |||| || ||||||||||||| ||||||||||||||||||||    
T  11536580 agtattacatagattcctagctattttacttccaatcctaacacaagagagagtttagttacccatg 11536646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 27128790 - 27128840
Alignment:
Q  29 ataaatcgtatacaaccaatcagattaatagtactacatagatttgtagct 79  Q
    ||||||| |||||||||||  |||||||||||||||||||||||| |||||    
T  27128790 ataaatcatatacaaccaacaagattaatagtactacatagatttatagct 27128840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 7395235 - 7395314
Alignment:
Q  50 agattaatagtactacatagatttgtagcttgttacatcaaatcctaacacaaaagagagtttagttacccatgagatat 129  Q
    ||||||||| |||||||||||||  || ||  ||| ||| || ||||||||  |||||||||||||||||||||| ||||    
T  7395235 agattaatattactacatagattcctaactatttatatccaaccctaacaccgaagagagtttagttacccatgatatat 7395314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 2797 - 2825
Alignment:
Q  96 aacacaaaagagagtttagttacccatga 124  Q
    |||||||||||||||||||||||||||||    
T  2797 aacacaaaagagagtttagttacccatga 2825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University