View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5014-Insertion-1 (Length: 861)

Name: NF5014-Insertion-1
Description: NF5014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5014-Insertion-1
NF5014-Insertion-1
[»] chr6 (16 HSPs)
chr6 (366-855)||(1118350-1118845)
chr6 (5-367)||(27765318-27765681)
chr6 (473-849)||(10374608-10374988)
chr6 (523-622)||(22885213-22885314)
chr6 (778-849)||(2944285-2944356)
chr6 (473-729)||(14448453-14448710)
chr6 (523-622)||(22903171-22903272)
chr6 (523-684)||(22917953-22918117)
chr6 (764-835)||(26948016-26948088)
chr6 (511-847)||(3904516-3904855)
chr6 (793-841)||(10290758-10290806)
chr6 (517-571)||(32668630-32668684)
chr6 (496-593)||(34208832-34208930)
chr6 (652-681)||(2401372-2401401)
chr6 (791-840)||(2401520-2401569)
chr6 (540-640)||(10289067-10289170)
[»] chr5 (10 HSPs)
chr5 (5-369)||(12870153-12870518)
chr5 (225-368)||(43469538-43469681)
chr5 (496-689)||(24394586-24394781)
chr5 (605-704)||(27598709-27598807)
chr5 (652-831)||(19006407-19006584)
chr5 (793-849)||(27598887-27598944)
chr5 (792-840)||(22652170-22652218)
chr5 (540-575)||(16842517-16842552)
chr5 (651-738)||(23225018-23225105)
chr5 (548-684)||(22652327-22652464)
[»] chr8 (2 HSPs)
chr8 (473-849)||(38802105-38802483)
chr8 (540-573)||(24482317-24482350)
[»] chr7 (18 HSPs)
chr7 (225-368)||(10646041-10646184)
chr7 (473-838)||(11918192-11918556)
chr7 (646-847)||(6629198-6629396)
chr7 (764-821)||(15708402-15708459)
chr7 (482-835)||(5299087-5299440)
chr7 (540-573)||(30226084-30226117)
chr7 (778-849)||(12484514-12484586)
chr7 (778-849)||(12505945-12506017)
chr7 (652-704)||(21383518-21383570)
chr7 (523-631)||(12505688-12505798)
chr7 (540-594)||(2076505-2076558)
chr7 (540-594)||(2082924-2082977)
chr7 (516-573)||(9732862-9732920)
chr7 (764-833)||(10309359-10309429)
chr7 (540-594)||(14984671-14984724)
chr7 (540-594)||(15414282-15414335)
chr7 (764-821)||(24814156-24814214)
chr7 (524-572)||(12484259-12484308)
[»] chr1 (9 HSPs)
chr1 (225-367)||(12606569-12606711)
chr1 (225-368)||(46566568-46566711)
chr1 (245-367)||(49195411-49195533)
chr1 (225-367)||(40908316-40908458)
chr1 (767-849)||(4650152-4650234)
chr1 (523-704)||(21433929-21434112)
chr1 (648-849)||(24285031-24285231)
chr1 (523-594)||(25123321-25123393)
chr1 (540-573)||(49086718-49086751)
[»] chr3 (10 HSPs)
chr3 (245-367)||(33365925-33366047)
chr3 (523-841)||(43901894-43902211)
chr3 (656-835)||(8532686-8532868)
chr3 (540-681)||(19583927-19584069)
chr3 (522-593)||(10082380-10082452)
chr3 (654-703)||(2165922-2165971)
chr3 (522-593)||(10189305-10189377)
chr3 (651-730)||(5535350-5535429)
chr3 (540-594)||(8531391-8531445)
chr3 (523-583)||(27716326-27716387)
[»] chr2 (20 HSPs)
chr2 (516-849)||(15324990-15325325)
chr2 (507-849)||(31067336-31067679)
chr2 (496-849)||(17840999-17841348)
chr2 (474-849)||(18593508-18593883)
chr2 (540-703)||(21713347-21713511)
chr2 (225-368)||(3081202-3081345)
chr2 (648-841)||(45550153-45550344)
chr2 (540-704)||(17395555-17395719)
chr2 (299-368)||(10983161-10983229)
chr2 (473-583)||(40588739-40588850)
chr2 (545-689)||(8944737-8944881)
chr2 (764-835)||(8162753-8162825)
chr2 (648-738)||(28645626-28645718)
chr2 (764-827)||(21713230-21713293)
chr2 (776-841)||(25867403-25867469)
chr2 (764-821)||(20476437-20476494)
chr2 (543-576)||(20186609-20186642)
chr2 (764-821)||(20475154-20475211)
chr2 (783-835)||(28645528-28645581)
chr2 (508-572)||(28645793-28645858)
[»] chr4 (10 HSPs)
chr4 (245-367)||(31525455-31525577)
chr4 (225-368)||(23538151-23538294)
chr4 (542-841)||(39668295-39668577)
chr4 (482-738)||(11865078-11865333)
chr4 (509-571)||(24608673-24608736)
chr4 (764-841)||(12492839-12492918)
chr4 (523-575)||(12607263-12607316)
chr4 (796-849)||(11864966-11865020)
chr4 (764-814)||(50908074-50908124)
chr4 (540-573)||(13268845-13268878)
[»] scaffold0238 (2 HSPs)
scaffold0238 (278-368)||(5099-5189)
scaffold0238 (225-285)||(5323-5383)
[»] scaffold0054 (1 HSPs)
scaffold0054 (523-622)||(8730-8831)
[»] scaffold0070 (1 HSPs)
scaffold0070 (764-821)||(5995-6052)
[»] scaffold0157 (1 HSPs)
scaffold0157 (764-841)||(27559-27638)
[»] scaffold0423 (1 HSPs)
scaffold0423 (764-821)||(13831-13888)
[»] scaffold0062 (1 HSPs)
scaffold0062 (540-573)||(2205-2238)


Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 366 - 855
Target Start/End: Original strand, 1118350 - 1118845
Alignment:
Q  366 attcatggtaaaaacaaagataattgaaattctggcaggtagtaaaatatgtcgaacatgatgtcaaaacatacggaatgtcgagcacaatgtaattaac 465  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1118350 attcatgataaaaacaaagataattgaaattctggcaggtagtaaaatatgtcgaacatgatgtcaaaacatacggaatgtcgagcacaatgtaattaac 1118449  T
Q  466 aacttagcaacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaaccagttcggtgcaacgtcacctacat 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  1118450 aacttagcaacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaattagttaggtgcaacgtcacctacat 1118549  T
Q  566 ctgggggcattcaagctatgaaggaaatcgattataaaatattagtttgaagtcctacgtaaactacccccggtttacaggtttcgcacctaatcactac 665  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  1118550 ctgggggcattcaagctatgaaggaaatcgactataaaatattagtttgaagtcctacataaactacctccggtttacagctttcgcacctaatcactac 1118649  T
Q  666 ccgtgatatttctatctaaaacacacctaaatatgagaca------ccccccacctcctctcaatcactcactagtgatttcaacaaaataaaaatcaaa 759  Q
    ||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1118650 ccgtgatatttctatctaaaacacacctaaatatgagacaccccccccccccacctcctctcaatcactcactagtgatttcaacaaaataaaaatcaaa 1118749  T
Q  760 acaaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactctaccatga 855  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1118750 acgaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtccaactctaccatga 1118845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 367
Target Start/End: Complemental strand, 27765681 - 27765318
Alignment:
Q  5 acacatgaggtacttcatcgctctctcataaagaagaaggagttagaggaggaaagaatttggcattgaaaacataagagtgaatgggaatagcaaaaaa 104  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27765681 acacgtgaggtacttcatcgctctctcagaaagaagaaggagttagaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaa 27765582  T
Q  105 gttgagagattggggagatagagagacacctcgggtaatacaaactcatttgaaaactgaatggacattgaaggttcattg------gtgggtagttggc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||      |||||||||||||    
T  27765581 gttgagagattggggagatagagagacacctcgggtaatacaaattcatttgaaaactgaatggacattgaaggttcattggtgttagtgggtagttggc 27765482  T
Q  199 agatagggtcagcacttaatgc-agcttgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattatggatta 297  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||| || |||||||  |||||||||||||||||||||||||||||||||||||||    
T  27765481 agatagggtcagcacttaatgcaaatttgaaaggtcatcagatcaaagactaagatttatggtgtggttggcagttgagattagcattaattatggatta 27765382  T
Q  298 gggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggat 367  Q
    |||||||||||||| ||||||||||||||      |||||||||||||||| ||||| ||||||||||||    
T  27765381 gggagggaaaaacaaaagtgattagggca------ccagctcatcaagtctagctttaataataaaggat 27765318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 473 - 849
Target Start/End: Complemental strand, 10374988 - 10374608
Alignment:
Q  473 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggg 571  Q
    |||||||| |||||| |||||| ||||||||||||||||||| |||||| |||||| |||| | ||| ||||||  |||||||||||||||||| |||||    
T  10374988 caacacaaataacaattaacaacttaaagtaaattgcagaaagtaaatgacacaaggtattagttaacccagtttagtgcaacgtcacctacatttgggg 10374889  T
Q  572 gc-attcaagctatgaaggaaatcgattataa-aatattagtttgaagtcctacgtaaactacccccggtttac-aggtttcgcacctaatcactacccg 668  Q
    || |||||||| | |||||||| | | ||||| | |||||||||||||||||| |||||  ||  | | |||||  |  |||||| | |||||||||||     
T  10374888 gcaattcaagccaggaaggaaaaccactataatagtattagtttgaagtcctatgtaaataacatctgatttacttgccttcgcatcaaatcactacccc 10374789  T
Q  669 tgatatttctatctaaaacacacctaaatatgaga-caccccccacctcctctcaatcactcact-agtgatttcaacaaaataaaaatcaaaacaaaga 766  Q
    |||||||||||||||| | || || | |||| ||| |    |  || ||||||||||||| || |  |||||| |||| ||||| ||| ||| |   |||    
T  10374788 tgatatttctatctaagagaccccaagatataagatcttatctaacttcctctcaatcacacaatctgtgattacaac-aaatacaaa-caatatggaga 10374691  T
Q  767 cacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactcta 849  Q
    ||||||||||  ||||||||| |   || |||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  10374690 cacactccaatcaacagaatctattcttacttaaaagcttatgagtgattcacaattacaactcaactatcagtccaactcta 10374608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 523 - 622
Target Start/End: Complemental strand, 22885314 - 22885213
Alignment:
Q  523 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataa-aatattagtttgaagtcc 620  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||||||| ||||| | |||||||||| | ||||| | ||||||||||||||||    
T  22885314 cacaagatatttgttaacccagtacggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatctactataatagtattagtttgaagtcc 22885215  T
Q  621 ta 622  Q
    ||    
T  22885214 ta 22885213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 778 - 849
Target Start/End: Original strand, 2944285 - 2944356
Alignment:
Q  778 aaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactcta 849  Q
    |||||||||||||  || |||||||||||| || |||||||||||||||||||||||||||||| |||||||    
T  2944285 aaacagaatccactcttacttaaaagcttaagattgattcacaattacaactcaactatcagtccaactcta 2944356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 473 - 729
Target Start/End: Complemental strand, 14448710 - 14448453
Alignment:
Q  473 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggg 571  Q
    |||||||| || |||||||||| ||||||  || | | ||||  ||| || |||||||||||| ||||| |||||||||||||||||| || ||||  ||    
T  14448710 caacacaaatagcaaataacaaattaaagataaataccgaaagaaaaaggtacaagttatttgttaacctagttcggtgcaacgtcacttagatcttagg 14448611  T
Q  572 gcattcaagctatgaaggaaatcgattataaaa-tattagtttgaagtcctacgtaaactacccccggtttacaggtttcgcacctaatcactacccgtg 670  Q
    ||  ||||||   |||||||||| | ||| | | ||||||||||||| ||| | ||||| ||| ||||| |||    ||||||||||||| |||||| ||    
T  14448610 gctatcaagcctagaaggaaatccactattatagtattagtttgaag-cctgcataaacaacctccggtctactaaattcgcacctaatctctacccatg 14448512  T
Q  671 atatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactc 729  Q
    |||||||||||||  |||| || | |||| |||| || | ||||||| |||||||||||    
T  14448511 atatttctatctatgacactccaagatataagacccctctcacctcccctcaatcactc 14448453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 622
Target Start/End: Complemental strand, 22903272 - 22903171
Alignment:
Q  523 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataa-aatattagtttgaagtcc 620  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||| ||| ||||| | |||| ||||| | ||||| | ||||||||||||||||    
T  22903272 cacaagatatttgttaacccagtgcggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactataatagtattagtttgaagtcc 22903173  T
Q  621 ta 622  Q
    ||    
T  22903172 ta 22903171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 523 - 684
Target Start/End: Complemental strand, 22918117 - 22917953
Alignment:
Q  523 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataa-aatattagtttgaagtcc 620  Q
    |||||| |||||| ||||| |||  |||||||||||||||||||||| || ||| ||||| | |||||||||| || |||| | ||||||||||||||||    
T  22918117 cacaagatatttgttaacccagtatggtgcaacgtcacctacatctgaggacatccaagccaggaaggaaatctataataatagtattagtttgaagtcc 22918018  T
Q  621 tacgtaaactacccccggtttacag-gtttcgcacctaatcactacccgtgatatttctatctaa 684  Q
    || || ||| ||    |||| || |  | || |||||||||||| ||||||||||||||||||||    
T  22918017 tatgtgaacaacatttggttcactgcctatctcacctaatcacttcccgtgatatttctatctaa 22917953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 764 - 835
Target Start/End: Complemental strand, 26948088 - 26948016
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaacta 835  Q
    ||||||||||| ||||||| |||||||  |||||| |||||||||||||||||||||| ||||||| ||||||    
T  26948088 agacacactccgagaaacataatccactcttgctttaaagcttacgagtgattcacaacttacaacacaacta 26948016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 511 - 847
Target Start/End: Complemental strand, 3904855 - 3904516
Alignment:
Q  511 gaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataaaa-tatt 608  Q
    |||| |||| |||||||| |||||| ||||| ||||||||| |||||| ||||| | |||||  |  ||||| | |||||||||| | ||||| | ||||    
T  3904855 gaaaataaaaggcacaagatatttgttaacctagttcggtgaaacgtcccctacgtttggggctac-caagccaggaaggaaatcaactataatagtatt 3904757  T
Q  609 agtttgaagtcctacgtaaactacccccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccc 708  Q
    | ||  |||||||| || ||| ||| ||||||||  |  ||| ||| ||||||||||||||||||||||||||||| || | |||| ||| |||||  ||    
T  3904756 aattgaaagtcctatgtgaacaacctccggtttatcgccttctcacttaatcactacccgtgatatttctatctaagaccctcctagataagagacctcc 3904657  T
Q  709 ccc--acctcctctcaatcactc-actagtgatttcaacaaaataaaaatcaaaacaaagacacactccaagaaacagaatccacctttgcttaaaagct 805  Q
    | |  || ||||||||||||||| ||  |||||    ||||| || |||  ||||   ||||||||| | ||||||| ||| ||   |||||||||||||    
T  3904656 ctctcacttcctctcaatcactctacatgtgataaggacaaa-tacaaag-aaaatggagacacactacgagaaacaaaattcattcttgcttaaaagct 3904559  T
Q  806 tacgagtgattcac-aattacaactcaactatcagtcaaactc 847  Q
    || ||||||||||| || |||||||||||||| |||| |||||    
T  3904558 tatgagtgattcacaaaatacaactcaactataagtccaactc 3904516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 793 - 841
Target Start/End: Original strand, 10290758 - 10290806
Alignment:
Q  793 ttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtc 841  Q
    ||||||||||||||  ||||||||||||| |||||||||||| ||||||    
T  10290758 ttgcttaaaagcttcagagtgattcacaaatacaactcaactttcagtc 10290806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 517 - 571
Target Start/End: Original strand, 32668630 - 32668684
Alignment:
Q  517 aaatggcacaagttatttgctaaccagttcggtgcaacgtcacctacatctgggg 571  Q
    ||||| |||||||| ||||  | |||||||||||||| |||||||||||||||||    
T  32668630 aaatgacacaagttgtttgtaacccagttcggtgcaaagtcacctacatctgggg 32668684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 496 - 593
Target Start/End: Original strand, 34208832 - 34208930
Alignment:
Q  496 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaat 593  Q
    |||||||||| ||||| ||  ||||  |||||  |||||||||||| |||||||||||| || |||||||||||  ||||| | ||| |||||||||||    
T  34208832 ttaaagtaaaatgcaggaaggaaataacacaaagtatttgctaacccagttcggtgcaatgttacctacatctgatggcatccgagccatgaaggaaat 34208930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 652 - 681
Target Start/End: Original strand, 2401372 - 2401401
Alignment:
Q  652 cacctaatcactacccgtgatatttctatc 681  Q
    ||||||||||||||||||||||||||||||    
T  2401372 cacctaatcactacccgtgatatttctatc 2401401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 840
Target Start/End: Original strand, 2401520 - 2401569
Alignment:
Q  791 ctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagt 840  Q
    ||||||||||||||||   ||||||||| || ||||||||||||||||||    
T  2401520 ctttgcttaaaagctttaaagtgattcataaatacaactcaactatcagt 2401569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 640
Target Start/End: Original strand, 10289067 - 10289170
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataa---aatattagtttgaagtcctacgtaaactaccccc 636  Q
    |||||||||||||| ||||| || ||||||||||||  | | || |||||||||| | |||||    ||||||||||||||||||| || ||| ||| ||    
T  10289067 ccagttcggtgcaatgtcacttatatctgggggcatctacgttaggaaggaaatccactataatagtatattagtttgaagtcctatgtgaacaacctcc 10289166  T
Q  637 ggtt 640  Q
    ||||    
T  10289167 ggtt 10289170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 5 - 369
Target Start/End: Complemental strand, 12870518 - 12870153
Alignment:
Q  5 acacatgaggtacttcatcgctctctcataaagaagaaggagttagaggaggaaagaatttggcattgaaaacataagagtgaatgggaatagcaaaaaa 104  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12870518 acacatgaggtacttcatcgctctctcagaaaaaagaaggagttagaggaggaaagagtttggcattgaaaacataagagtgaatgggaatagcaaaaaa 12870419  T
Q  105 gttgagagattggggagatagagagacacctcgggtaatacaaactcatttgaaaactgaatggacattgaaggttcattggtgggtagttggcagatag 204  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12870418 gttgagagattggggagatagagagacacctcgggtaatacgaattcatttgaaaactgaatggacattgaaggttcattagtgggtagttggcagatag 12870319  T
Q  205 ggtcagcacttaatgc-agcttgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagg 303  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||  ||||||||||||| ||||||||||||    
T  12870318 ggtcagcacttaatgcaagcttgaaaagtcatcagatcaaaggctgagatttagggtgtggttggttgttgaagttagcattaattacggattagggagg 12870219  T
Q  304 gaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggattc 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12870218 gaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttatagtaaaggattc 12870153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 225 - 368
Target Start/End: Original strand, 43469538 - 43469681
Alignment:
Q  225 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagggaaaaacagaagtgattaggg 324  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||| ||| |||| ||||||||| ||||| |||||||||||  ||||||||||||||    
T  43469538 tgaaaggtcttccgatcaaaggctgagatttagggtgtggttggcagatgaaattaacattaattacggatttgggagggaaaataagaagtgattaggg 43469637  T
Q  325 caacactgccagctcatcaagtctggcttttataataaaggatt 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43469638 caacactgccagctcatcaagtctggcttttataataaaggatt 43469681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 496 - 689
Target Start/End: Original strand, 24394586 - 24394781
Alignment:
Q  496 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 594  Q
    ||||| ||||||||||||| ||||||  || ||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  24394586 ttaaattaaattgcagaaagtaaatgatacgagttatttgttaacccatttcggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatc 24394685  T
Q  595 gattataa-aatattagtttgaagtcctacgtaaactacccccggtttac-aggtttcgcacctaatcactacccgtgatatttctatctaaaacac 689  Q
     | ||||| | |||| |||||||||||| ||| ||| ||| |||||||||  |  |||||||||||||| ||||  |||||||||||||||| ||||    
T  24394686 cactataatagtatttgtttgaagtcctgcgt-aacaacctccggtttacttgccttcgcacctaatcattacctatgatatttctatctaagacac 24394781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 605 - 704
Target Start/End: Original strand, 27598709 - 27598807
Alignment:
Q  605 tattagtttgaagtcctacgtaaactacccccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagac 704  Q
    ||||||||||||  ||||| ||||| ||| |||||||||  ||||||||||||||||||||  |||||||||||||||||||||| |||| || ||||||    
T  27598709 tattagtttgaaa-cctacataaacaacctccggtttactagtttcgcacctaatcactacttgtgatatttctatctaaaacactcctagatgtgagac 27598807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 652 - 831
Target Start/End: Complemental strand, 19006584 - 19006407
Alignment:
Q  652 cacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgatttcaacaaaataa 751  Q
    |||||||||||||||| ||  |||||||||||| |||| |||| || |||||| || | ||| ||| ||||||||||||| ||||||   ||  |||||     
T  19006584 cacctaatcactacccatgcaatttctatctaagacactcctagatctgagacccctctcacttcccctcaatcactcaccagtgat---aatcaaatac 19006488  T
Q  752 aaatcaaaacaaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactca 831  Q
    ||   ||||   ||||||||| | ||||||||||| |||  ||||||||||||||| ||||||||||||| ||||||||||    
T  19006487 aatgaaaaatggagacacacttcgagaaacagaattcactcttgcttaaaagcttatgagtgattcacaacttacaactca 19006407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 793 - 849
Target Start/End: Original strand, 27598887 - 27598944
Alignment:
Q  793 ttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactcta 849  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||| |||| |||||||    
T  27598887 ttgcataaaagcttatgagtgattcacaacttacaactcaactattagtccaactcta 27598944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 792 - 840
Target Start/End: Complemental strand, 22652218 - 22652170
Alignment:
Q  792 tttgcttaaaagcttacgagtgattcacaattacaactcaactatcagt 840  Q
    |||||||||||||||  ||| ||||||||| ||||||||||||||||||    
T  22652218 tttgcttaaaagcttcagagcgattcacaagtacaactcaactatcagt 22652170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 575
Target Start/End: Original strand, 16842517 - 16842552
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggcat 575  Q
    |||||||||||||||||||||||||||||| |||||    
T  16842517 ccagttcggtgcaacgtcacctacatctggaggcat 16842552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 738
Target Start/End: Original strand, 23225018 - 23225105
Alignment:
Q  651 gcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgat 738  Q
    ||||||||||||||||||||  |||||||||||| || | |||| |||||| ||  | | ||| ||| ||||||||||||| ||||||    
T  23225018 gcacctaatcactacccgtgtaatttctatctaagactctcctagatatgaaacctctctcacttcccctcaatcactcaccagtgat 23225105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 684
Target Start/End: Complemental strand, 22652464 - 22652327
Alignment:
Q  548 gtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataaaat-attagtttgaagtcctacgtaaactacccccggtttacagg 646  Q
    |||||||||| ||||||| |||||||||  |||| | |||||||||  | ||||| || ||||||||||||||||| || ||| ||| || ||| ||       
T  22652464 gtgcaacgtcgcctacatatgggggcatcgaagccaggaaggaaattcactataatattattagtttgaagtcctatgtgaacaacctccagttcacttc 22652365  T
Q  647 tttcgcacctaatcactacccgtgatatttctatctaa 684  Q
     ||| |||| ||| ||||||  ||||||||||||||||    
T  22652364 cttctcaccaaataactacctttgatatttctatctaa 22652327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 9e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 473 - 849
Target Start/End: Complemental strand, 38802483 - 38802105
Alignment:
Q  473 caacacaattaacaaataacaag-ttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctggg 570  Q
    |||||||| |||||| ||||||  || |||||||||| ||||| || |||| ||||||||||||  || |||||| ||| |||| |||||||||||||||    
T  38802483 caacacaaataacaattaacaaacttgaagtaaattgtagaaaatagatggtacaagttatttgtaaatccagtttggtacaacatcacctacatctggg 38802384  T
Q  571 ggcattcaagctatgaaggaaatcgattataaaa-tattagtttgaagtcctacgtaaactacccccggtttacaggt-ttcgcacctaatcactacccg 668  Q
    ||||| ||||    |||||||||| | ||||| | ||||||||||||||| || ||||||  || || ||||||  || ||||||||||||||||| |||    
T  38802383 ggcatccaagtctggaaggaaatccactataatagtattagtttgaagtcttatgtaaacagcctccagtttacctgtcttcgcacctaatcactatccg 38802284  T
Q  669 tgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgatttcaacaaaataaaaatcaaaacaaagaca 768  Q
    ||||||||||||||||  ||||||||||||| | || || | ||| |||| |||||||||||| ||||||  ||||  ||  | ||||||||    ||||    
T  38802283 tgatatttctatctaaggcacacctaaatataaaacccctctcacttcctttcaatcactcaccagtgataacaac--aagtacaatcaaaatggggaca 38802186  T
Q  769 cactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactcta 849  Q
    ||||| ||||||||||||||||  ||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  38802185 cactctaagaaacagaatccactcttgattaaaagcttacgagtgattcacacttacaactcaactatcagtccaactcta 38802105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 573
Target Start/End: Original strand, 24482317 - 24482350
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggc 573  Q
    |||||| |||||||||||||||||||||||||||    
T  24482317 ccagtttggtgcaacgtcacctacatctgggggc 24482350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 4e-56; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 225 - 368
Target Start/End: Original strand, 10646041 - 10646184
Alignment:
Q  225 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagggaaaaacagaagtgattaggg 324  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||  ||||||||||||||    
T  10646041 tgaatggtcatcagatcaaaggctgagatttagggtgtggttggcagatgagattagcattaattacggatttgggagggaaaataagaagtgattaggg 10646140  T
Q  325 caacactgccagctcatcaagtctggcttttataataaaggatt 368  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  10646141 caacactgccagctcatcaagtctggcttttagaataaaggatt 10646184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 473 - 838
Target Start/End: Complemental strand, 11918556 - 11918192
Alignment:
Q  473 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggg 571  Q
    |||||||| |||| |  ||||| ||||||||||||| || || |||||  |||||  |||||| |||| ||||| |||||||| ||||||||||||||||    
T  11918556 caacacaaataaccataaacaacttaaagtaaattgtaggaagtaaataacacaaagtatttgttaactcagttgggtgcaacatcacctacatctgggg 11918457  T
Q  572 gcattcaagctatgaaggaaatcgattataaaa-tattagtttgaagtcctacgtaaactacccccggtttacaggtttcgcacctaatcactacccgtg 670  Q
    |||  ||||| |||||||||||  ||| ||| | | |||||||||||||||| |||||| ||| | ||||||| |  || ||||||||||||||||||||    
T  11918456 gcagccaagccatgaaggaaat--attgtaatagttttagtttgaagtcctatgtaaacaacctctggtttactgccttggcacctaatcactacccgtg 11918359  T
Q  671 atatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactc-actagtgatttcaacaaaataaaaatcaaaacaaagacac 769  Q
    |||||||||||||| ||||||||| |  |||||| || | ||  ||||||||||||| | ||  || |||  ||||||   | ||||||| |  ||||||    
T  11918358 atatttctatctaagacacacctagacgtgagacccctctcaattcctctcaatcacacaacccgttattataacaaa--tacaatcaaagcggagacac 11918261  T
Q  770 actccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatca 838  Q
    ||| ||| |||||||||| ||  |||||||||| ||||||||||||||||||||||| |||||||||||    
T  11918260 acttcaataaacagaatctactcttgcttaaaaacttacgagtgattcacaattacagctcaactatca 11918192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 646 - 847
Target Start/End: Complemental strand, 6629396 - 6629198
Alignment:
Q  646 gtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgatttcaaca 745  Q
    |||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||   | | ||| ||| ||||||||||||| | ||||   ||      
T  6629396 gtttcgcacctaatcactacccatgatatttctatctaagacactcctagatatgagatctctctcacttcccctcaatcactcaccaatgat---aatc 6629300  T
Q  746 aaataaaaatcaaaacaaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaa 844  Q
    ||||| || | ||||   |||||| ||||  ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||    
T  6629299 aaatacaa-tgaaaatggagacactctccgtgaaacagaatccactcttgcttaaaagcttacgagtgattcacaacttacaactcaactataagtccaa 6629201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 764 - 821
Target Start/End: Original strand, 15708402 - 15708459
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa 821  Q
    ||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  15708402 agacacactccaagaaacaaaatccactcttgcttaaaagcttacgagtgattcacaa 15708459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 482 - 835
Target Start/End: Original strand, 5299087 - 5299440
Alignment:
Q  482 taacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaag 580  Q
    ||||||||||||| ||||||  ||  || |||| |||||||||||||||||| | ||||| |||| ||| |||| || |||| |||| |||||   ||||    
T  5299087 taacaaataacaacttaaagataaaagctgaaagtaaatggcacaagttattcgttaacccagtttggtacaacatcgcctagatctaggggctaccaag 5299186  T
Q  581 ctatgaaggaaatcgattataaaa-tattagtttgaagtcctacgtaaactacccccggtttacaggtttcgcacctaatcactacccgtgatatttcta 679  Q
    | | |||||||||| | ||||| | ||||| ||||||| | | | ||||| ||| |  | ||||  | |||||||||||||||||||||||| |||||||    
T  5299187 ccaggaaggaaatccactataatagtattattttgaag-catgcataaacaacctcaagattactagcttcgcacctaatcactacccgtgaaatttcta 5299285  T
Q  680 tctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgatttcaacaaaataaaaatcaaaacaaagacacactccaagaa 779  Q
    ||||| |  | |||| ||| ||||| || | ||| ||| |||||| ||||||  |||||  ||||  || || |||  |||   |||||| ||||  |||    
T  5299286 tctaagaatcgcctagatacgagacccctctcacttcccctcaattactcaccggtgataacaac--aagaacaatagaaatggagacacgctccgtgaa 5299383  T
Q  780 acagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaacta 835  Q
    |||||||| ||  || ||||||||||||  |||||||||||| ||||||||||||||    
T  5299384 acagaatctactctttcttaaaagcttataagtgattcacaacttacaactcaacta 5299440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 540 - 573
Target Start/End: Original strand, 30226084 - 30226117
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggc 573  Q
    ||||||||||||||||||||||||||||||||||    
T  30226084 ccagttcggtgcaacgtcacctacatctgggggc 30226117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 778 - 849
Target Start/End: Original strand, 12484514 - 12484586
Alignment:
Q  778 aaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactcta 849  Q
    ||||| |||||||  |||||||||||||| ||||||||||| || |||||||||||||| ||||  |||||||    
T  12484514 aaacataatccactcttgcttaaaagcttgcgagtgattcagaacttacaactcaactaacagtgcaactcta 12484586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 778 - 849
Target Start/End: Original strand, 12505945 - 12506017
Alignment:
Q  778 aaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactcta 849  Q
    ||||| |||||||  |||||||||||||| ||||||||||| || |||||||||||||| ||||  |||||||    
T  12505945 aaacataatccactcttgcttaaaagcttgcgagtgattcagaacttacaactcaactaacagtgcaactcta 12506017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 652 - 704
Target Start/End: Complemental strand, 21383570 - 21383518
Alignment:
Q  652 cacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagac 704  Q
    |||||||||||||||||||  |||||||||||| |||| |||| |||||||||    
T  21383570 cacctaatcactacccgtgtaatttctatctaagacactcctagatatgagac 21383518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 631
Target Start/End: Original strand, 12505688 - 12505798
Alignment:
Q  523 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatct-gggggcattcaagctatgaaggaaatcgattataa-aatattagtttgaagtc 619  Q
    |||||| |||||| ||||| ||||||||| |||||||||||||||| ||||||   ||||||| |||||||||| | ||||| | ||| ||||||||| |    
T  12505688 cacaagatatttgttaacccagttcggtgtaacgtcacctacatctggggggctaccaagctaggaaggaaatctactataatagtatcagtttgaag-c 12505786  T
Q  620 ctacgtaaacta 631  Q
    || |||||||||    
T  12505787 cttcgtaaacta 12505798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 2076505 - 2076558
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 594  Q
    |||||||||||||||||||||||| |||||||||   ||||| ||||||||||||    
T  2076505 ccagttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatc 2076558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 2082924 - 2082977
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 594  Q
    |||||||||||||||||||||||| |||||||||   ||||| ||||||||||||    
T  2082924 ccagttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatc 2082977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 516 - 573
Target Start/End: Complemental strand, 9732920 - 9732862
Alignment:
Q  516 taaatggcacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggggc 573  Q
    |||| |||||||||| |||| |||| |||||| ||||||||||||||| ||||||||||    
T  9732920 taaaaggcacaagttgtttgttaactcagttcagtgcaacgtcacctagatctgggggc 9732862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 764 - 833
Target Start/End: Complemental strand, 10309429 - 10309359
Alignment:
Q  764 agacacactccaagaaacagaatccac-ctttgcttaaaagcttacgagtgattcacaattacaactcaac 833  Q
    ||||||||||||| ||||| || | || ||||||||||||||||  ||| ||||||||| |||||||||||    
T  10309429 agacacactccaataaacaaaacctactctttgcttaaaagctttagagagattcacaaatacaactcaac 10309359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 14984671 - 14984724
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 594  Q
    |||||||||||||||||||||||| |||||||||  |||||| | ||||||||||    
T  14984671 ccagttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatc 14984724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 15414282 - 15414335
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 594  Q
    |||||||||||||||||||||||| |||||||||  |||||| | ||||||||||    
T  15414282 ccagttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatc 15414335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 764 - 821
Target Start/End: Original strand, 24814156 - 24814214
Alignment:
Q  764 agacacactccaagaaacagaa-tccacctttgcttaaaagcttacgagtgattcacaa 821  Q
    ||||||||||| ||||| | || |||||  |||||||||||||||||||||||||||||    
T  24814156 agacacactccgagaaaaaaaaatccactcttgcttaaaagcttacgagtgattcacaa 24814214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 572
Target Start/End: Original strand, 12484259 - 12484308
Alignment:
Q  524 acaagttatttgctaacca-gttcggtgcaacgtcacctacatctggggg 572  Q
    ||||| |||||| |||||| |||||||| |||||||||||||||||||||    
T  12484259 acaagatatttgttaaccaagttcggtgtaacgtcacctacatctggggg 12484308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 225 - 367
Target Start/End: Original strand, 12606569 - 12606711
Alignment:
Q  225 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagggaaaaacagaagtgattaggg 324  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||  || |||||||||||    
T  12606569 tgaaaggtcatcagatcaaaggctgagatttagggtgtggttggcagatgggattagcattaattatggattagggagggaaaataaggagtgattaggg 12606668  T
Q  325 caacactgccagctcatcaagtctggcttttataataaaggat 367  Q
    ||||||||||||| |||||||||||||||||||| ||||||||    
T  12606669 caacactgccagcacatcaagtctggcttttatagtaaaggat 12606711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 225 - 368
Target Start/End: Complemental strand, 46566711 - 46566568
Alignment:
Q  225 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagggaaaaacagaagtgattaggg 324  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||   ||| |||||||||||  ||||||||||||||    
T  46566711 tgaaaggtcatcagatcaaaggctgagatttaggatgtggttggcagatgagattagcattaattacaaatttgggagggaaaataagaagtgattaggg 46566612  T
Q  325 caacactgccagctcatcaagtctggcttttataataaaggatt 368  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  46566611 caacactgccagctcatcaaatctggcttttataataaaggatt 46566568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 245 - 367
Target Start/End: Original strand, 49195411 - 49195533
Alignment:
Q  245 ggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 344  Q
    ||||| ||||||| ||||||||||||| |||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49195411 ggctgtgatttagtgtgtggttggcagatgagattaacattaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 49195510  T
Q  345 gtctggcttttataataaaggat 367  Q
    |||||||||||||||||||||||    
T  49195511 gtctggcttttataataaaggat 49195533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 225 - 367
Target Start/End: Complemental strand, 40908458 - 40908316
Alignment:
Q  225 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagggaaaaacagaagtgattaggg 324  Q
    ||||||||||| | | ||| ||||||||||||  ||||||||||||| |||||||| |||||| |     ||||||||||||||  ||   |||||||||    
T  40908458 tgaaaggtcatgaaagcaacggctgagatttaacgtgtggttggcagatgagattaacattaaattcatgttagggagggaaaatgagggatgattaggg 40908359  T
Q  325 caacactgccagctcatcaagtctggcttttataataaaggat 367  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  40908358 caacactgccagctcatcaagtctggcttttatagtaaaggat 40908316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 767 - 849
Target Start/End: Complemental strand, 4650234 - 4650152
Alignment:
Q  767 cacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaactcta 849  Q
    |||||||| |||||||||||| ||  ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  4650234 cacactccgagaaacagaatc-actcttgcttaaaagcttacgagtgattcacaacttacaactcaactatcagtctaactcta 4650152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 523 - 704
Target Start/End: Original strand, 21433929 - 21434112
Alignment:
Q  523 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataa-aatattagtttgaagtcc 620  Q
    ||||||||||||||||||| | ||| ||||||| ||||||||||||| |||||||||||  | |||||||||| | ||||| | ||||| ||  ||||||    
T  21433929 cacaagttatttgctaacccaattcagtgcaacttcacctacatctgagggcattcaagtcaagaaggaaatccactataatagtattaattcaaagtcc 21434028  T
Q  621 tacgtaaactacccccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagac 704  Q
    || || ||| |||  | ||| || |  ||| ||| ||||||||||||||||||||||||| ||| || | |||| |||||||||    
T  21434029 tatgtgaacaaccttcagttcactgccttctcacttaatcactacccgtgatatttctatataagactctcctagatatgagac 21434112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 648 - 849
Target Start/End: Original strand, 24285031 - 24285231
Alignment:
Q  648 ttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgatttcaacaaa 747  Q
    ||||||||||||||||||| |||| |||||||||||| | || |||| |||||||||  | | ||  ||| ||||||||||||| ||| ||  ||||||     
T  24285031 ttcgcacctaatcactaccagtgacatttctatctaagaaactcctagatatgagacctctctcaattcccctcaatcactcaccagttataacaacaag 24285130  T
Q  748 ataaaaatcaaaacaaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtcaaact 846  Q
       ||| | ||||   |||| || | | |||||||||||| ||  ||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||    
T  24285131 t--aaatttaaaatggagacccatttcgagaaacagaatcaactattgcttaaaagcttacgggtgattcacaatttacaactcaactatcaatccaact 24285228  T
Q  847 cta 849  Q
    |||    
T  24285229 cta 24285231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 523 - 594
Target Start/End: Original strand, 25123321 - 25123393
Alignment:
Q  523 cacaagttatttgctaac-cagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 594  Q
    |||||| |||||| |||| || ||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  25123321 cacaaggtatttgttaacacaattcggtgtaacgtcacctacatgtgggggcattcaagccatgaaggaaatc 25123393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 573
Target Start/End: Complemental strand, 49086751 - 49086718
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggc 573  Q
    |||||||||||||||||||||||||| |||||||    
T  49086751 ccagttcggtgcaacgtcacctacatgtgggggc 49086718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 8e-51; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 245 - 367
Target Start/End: Complemental strand, 33366047 - 33365925
Alignment:
Q  245 ggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 344  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33366047 ggctgtgatttagtgtgtggttggcagttgagattaacattaattatagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 33365948  T
Q  345 gtctggcttttataataaaggat 367  Q
    |||||||||||||||||||||||    
T  33365947 gtctggcttttataataaaggat 33365925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 523 - 841
Target Start/End: Complemental strand, 43902211 - 43901894
Alignment:
Q  523 cacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataaaa-tattagtttgaagtcc 620  Q
    |||||| |||||| ||| ||| |||||||||||||||||||||| ||||||| | ||||| | ||| |||||| | ||||| | |||||||||||||||     
T  43902211 cacaaggtatttgttaatccaattcggtgcaacgtcacctacatttgggggc-tccaagccaggaaagaaatctactataacagtattagtttgaagtc- 43902114  T
Q  621 tacgtaaactacccccggtttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctct 720  Q
    ||| ||||| ||| | |||||||  | |||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| || ||||  ||| ||    
T  43902113 tacataaacaacctctggtttactagcttcgcacctaatcactacccgtgatattcctatctaagacactcctagatatgagacccctcccatttcccct 43902014  T
Q  721 caatcactc--actagtgatttcaacaaaataaaaatcaaaacaaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattca 818  Q
    |||||||||   ||| ||||    |||||   | ||| ||||   |||||| || | ||||||| |||||||  |||||||||||||||||| |||||||    
T  43902013 caatcactcgtccta-tgataaggacaaa--cacaataaaaaaggagacacgcttcgagaaacataatccactcttgcttaaaagcttacgattgattca 43901917  T
Q  819 caattacaactcaactatcagtc 841  Q
    ||  |||||||||||||||||||    
T  43901916 cagatacaactcaactatcagtc 43901894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 656 - 835
Target Start/End: Original strand, 8532686 - 8532868
Alignment:
Q  656 taatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcac-tcactagtgatttcaacaa-aataaaa 753  Q
    ||||||||| ||||| ||||||||||||| || | ||||| |||||||| || | ||| ||||||||||||| || |  |||||||||||||  |||| |    
T  8532686 taatcactatccgtggtatttctatctaagactctcctaagtatgagacccctctcacttcctctcaatcacatcccctgtgatttcaacaatgataaca 8532785  T
Q  754 atcaaaacaaagacacactccaagaaacagaatccac-ctttgcttaaaagcttacgagtgattcacaattacaactcaacta 835  Q
    ||||| |   ||||||||||||||||||| || |  | ||||||||||||||||   || ||||||||| |||||||||||||    
T  8532786 atcaagaaggagacacactccaagaaacaaaaccttctctttgcttaaaagcttcaaagagattcacaagtacaactcaacta 8532868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 681
Target Start/End: Complemental strand, 19584069 - 19583927
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataaaa-tattagtttgaagtcctacgtaaactacccccgg 638  Q
    ||||||| |||||| ||||||||||||| |||| || ||||| | |||| ||||| | ||||| | |||||||| ||||||||| || ||| ||||||||    
T  19584069 ccagttcagtgcaatgtcacctacatctaggggaatccaagccaggaagaaaatccactataatagtattagttcgaagtcctatgtgaacaacccccgg 19583970  T
Q  639 tttacaggtttcgcacctaatcactacccgtgatatttctatc 681  Q
    || ||    ||| |||| |||||||||||||||||||||||||    
T  19583969 ttcactaccttctcaccgaatcactacccgtgatatttctatc 19583927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 593
Target Start/End: Complemental strand, 10082452 - 10082380
Alignment:
Q  522 gcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaat 593  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||||| |||||   ||||||| |||||||||    
T  10082452 gcacaagttgtttgttaacccagttcggtgcaacgtcacctacatctaggggctaccaagctaggaaggaaat 10082380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 654 - 703
Target Start/End: Complemental strand, 2165971 - 2165922
Alignment:
Q  654 cctaatcactacccgtgatatttctatctaaaacacacctaaatatgaga 703  Q
    |||||||||||||| |||||||||||||||| || |||||| ||||||||    
T  2165971 cctaatcactacccatgatatttctatctaagactcacctagatatgaga 2165922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 522 - 593
Target Start/End: Complemental strand, 10189377 - 10189305
Alignment:
Q  522 gcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaat 593  Q
    ||||||||| |||| ||||| |||||||||||||||||||||||| | |||||   ||||||| |||||||||    
T  10189377 gcacaagttgtttgttaacccagttcggtgcaacgtcacctacatgtaggggctaccaagctaggaaggaaat 10189305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 651 - 730
Target Start/End: Original strand, 5535350 - 5535429
Alignment:
Q  651 gcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactca 730  Q
    ||||||||||||||||||||  ||| |||||||| ||||| ||| ||||||||| || | ||| ||  ||||||||||||    
T  5535350 gcacctaatcactacccgtgtaattactatctaagacacatctagatatgagacccctctcacttctcctcaatcactca 5535429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 8531391 - 8531445
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 594  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| |  |||||||||    
T  8531391 ccagttcggtgcaacgtcacctacctctggtggcatccaagccagaaaggaaatc 8531445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 583
Target Start/End: Original strand, 27716326 - 27716387
Alignment:
Q  523 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagcta 583  Q
    |||||| |||||| ||||| ||||| |||||||||||||||||| || |||||| |||||||    
T  27716326 cacaagatatttggtaacctagttcagtgcaacgtcacctacatatgcgggcatccaagcta 27716387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 8e-51; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 516 - 849
Target Start/End: Original strand, 15324990 - 15325325
Alignment:
Q  516 taaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataaaa-tattagttt 613  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||   ||||| ||||| | |||| ||||| | ||||| | |||||||||    
T  15324990 taaatggcacaagttatttgttaacccagttcggtgcaacttcaccaacatcttaaggcatccaagccaggaagaaaatctactataatagtattagttt 15325089  T
Q  614 gaagtcctacgtaaactacccccggtttacaggt-ttcgcacctaatcactacccgtgat-atttctatctaaaacacacctaaatatgagacacccccc 711  Q
     ||||||||||||||| |||  ||||||||  |  ||||||| |||||||||| |||||| |||| ||||||| |||| |||| ||| || || || | |    
T  15325090 aaagtcctacgtaaacaaccttcggtttacttgccttcgcacttaatcactactcgtgattatttttatctaagacactcctagataagatacccctctc 15325189  T
Q  712 acctcctctcaatcactcactagtgatttcaacaaaataaaaatcaaaacaaagacacactccaagaaacagaatccacctttgcttaaaagcttacgag 811  Q
    || |||| |||||||||||  |  |||  |||||||   | |||||||||| || ||||||||||||||| |||| |||  |||||||||||||||| ||    
T  15325190 acttcctttcaatcactcatcaacgataacaacaaat--acaatcaaaacagaggcacactccaagaaacggaattcactcttgcttaaaagcttacaag 15325287  T
Q  812 tgattcacaattacaactcaactatcagtcaaactcta 849  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15325288 tgattcacaattacaactcaactatcagtcaaactcta 15325325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 507 - 849
Target Start/End: Complemental strand, 31067679 - 31067336
Alignment:
Q  507 tgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataaaa- 604  Q
    |||| ||| |||||| ||||||||||||| ||||| |||| ||||||||||||||||| |||||||||   |||   | |||||||||| | ||||| |     
T  31067679 tgcaaaaagtaaatgacacaagttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaatccactataatag 31067580  T
Q  605 tattagtttgaagtcctacgtaaactacccccggtttacaggt-ttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgaga 703  Q
    |||||||||||||||||||| |||| ||| | ||||| |  |  ||| |||||||||||||||| |||||||||||||||| |||||| || ||||| ||    
T  31067579 tattagtttgaagtcctacggaaacaacctctggtttgcttgccttcacacctaatcactacccatgatatttctatctaagacacacatagatatggga 31067480  T
Q  704 caccccccacctcctctcaatcactcactagtgatttcaacaaaataaaaatcaaaacaaagacacactccaagaaacagaatccacctttgcttaaaag 803  Q
     || | | || |||||| ||||| ||||||| |||  ||||||    | ||||||||   |  |||||||| ||||| |||||| ||  |||||||||||    
T  31067479 tactctc-acttcctcttaatcattcactagggataacaacaagt--acaatcaaaatggaatcacactccgagaaatagaatctactcttgcttaaaag 31067383  T
Q  804 cttacgagtgattcac-aattacaactcaactatcagtcaaactcta 849  Q
    |||| ||||||||||| |||||||||||||||||||||  |||||||    
T  31067382 cttatgagtgattcacaaattacaactcaactatcagttcaactcta 31067336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 496 - 849
Target Start/End: Complemental strand, 17841348 - 17840999
Alignment:
Q  496 ttaaagtaaattgcagaaattaaatggcacaagttatttgctaacca-gttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatc 594  Q
    ||||| |||||| ||| || |||||| |||||||||||  |||| || |||||  |||||||||| ||||| |||||||||  ||||   ||||||| ||    
T  17841348 ttaaaataaattacagtaagtaaatgacacaagttatt--ctaatcaagttcgtggcaacgtcacatacatatgggggcatcaaagcctggaaggaagtc 17841251  T
Q  595 gattataaaa-tattagtttgaagtcctacgtaaactacccccggtttacaggt-ttcgcacctaatcactacccgtgatatttctatctaaaacacacc 692  Q
     | ||||| | ||||||||||||||| ||||||||| ||| |||||||||     ||| |  |||||||||||||||| |||||||||||||  |||||     
T  17841250 cactataatagtattagtttgaagtcatacgtaaacaacctccggtttactttccttctcttctaatcactacccgtggtatttctatctaagccacaca 17841151  T
Q  693 taaatatgagacaccccccacctcctctcaatcactcactagtgatttcaacaaaataaaaatcaaaacaaagacacactccaagaaacagaatccacct 792  Q
    || ||||| ||| || ||||| |||| ||||||| |||| ||||||   ||||||   | | |||| |   ||||||||||||| ||||| |||||||      
T  17841150 tagatatgggacccctcccacttcctatcaatcaatcaccagtgat---aacaaat--acagtcaagatggagacacactccaataaacaaaatccactc 17841056  T
Q  793 ttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactcta 849  Q
    |||| |||||||| || |||||||||||||||||||||||||||||||| |||||||    
T  17841055 ttgcgtaaaagctgacaagtgattcacaattacaactcaactatcagtccaactcta 17840999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 474 - 849
Target Start/End: Original strand, 18593508 - 18593883
Alignment:
Q  474 aacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctggggg 572  Q
    ||||||| ||||||  ||||| || |||||||||| || || |||||  |||||  |||||| ||||| |||||||||||| |||||||||||||||||     
T  18593508 aacacaaataacaataaacaaatttaagtaaattgtaggaagtaaataacacaaagtatttgttaacccagttcggtgcaatgtcacctacatctgggg- 18593606  T
Q  573 cattcaagctatgaaggaaatcgattataa-aatattagtttgaagtcctacgtaaactacccccggtttacaggtttcgcacctaatcactacccgtga 671  Q
    ||| ||||| | ||||||| || | ||||| ||||||||||||||||| |  ||| |  ||| |  ||||||    ||| ||  || |||||||||||||    
T  18593607 catccaagccaagaaggaa-tccactataataatattagtttgaagtcatttgtatataacctctagtttacttccttcacatttagtcactacccgtga 18593705  T
Q  672 tatttctatctaaaacacacctaaatatgagacaccccc-cacctcctctcaatcactca-ctagtgatttcaacaaaataaaaatcaaaacaaagacac 769  Q
    ||||||||||||| || |||||| ||||||||  ||  | ||| ||||||||||||| || |  |||||| |||||||   | ||||||||   ||||||    
T  18593706 tatttctatctaagactcacctagatatgagatcccatctcacttcctctcaatcacacatcctgtgattacaacaaat--acaatcaaaaatgagacac 18593803  T
Q  770 actccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtcaaactcta 849  Q
    ||||||| ||| ||||||||   || ||||||||||| |||||||||| |||||||||| |||||||||||  |||||||    
T  18593804 actccaataaatagaatccattctttcttaaaagcttgcgagtgattcgcaattacaacgcaactatcagtttaactcta 18593883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 540 - 703
Target Start/End: Complemental strand, 21713511 - 21713347
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataaaa-tattagtttgaagtcctacgtaaactacccccgg 638  Q
    |||||| |||||||| |||||||||| | ||||||| ||| | | |||||||||| | ||||| | ||||||||||||||| |  |||||| ||| | ||    
T  21713511 ccagtttggtgcaacatcacctacatgtaggggcatccaaaccaggaaggaaatccactataatagtattagtttgaagtcatgtgtaaacaacctctgg 21713412  T
Q  639 tttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgaga 703  Q
    ||||| |  |||||||||||||||||||| |||||||||||||||| || |||||| ||||||||    
T  21713411 tttactgccttcgcacctaatcactacccatgatatttctatctaagactcacctagatatgaga 21713347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 225 - 368
Target Start/End: Complemental strand, 3081345 - 3081202
Alignment:
Q  225 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagggaaaaacagaagtgattaggg 324  Q
    ||||||||||| | | ||| ||||||||||||  ||||| ||||||| |||||||| |||||| |  |  ||||||||||||||  ||   |||||||||    
T  3081345 tgaaaggtcatgaaagcaacggctgagatttaatgtgtgattggcagatgagattaacattaaatgcgtgttagggagggaaaatgagggatgattaggg 3081246  T
Q  325 caacactgccagctcatcaagtctggcttttataataaaggatt 368  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  3081245 caacactgccagctcatcaagtctggctttaatagtaaaggatt 3081202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 648 - 841
Target Start/End: Original strand, 45550153 - 45550344
Alignment:
Q  648 ttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgatttcaacaaa 747  Q
    |||||||||||||||||  ||| |||||||||||||| ||||   || ||||||||| || | ||| ||| ||||| ||||||| | ||||  |||||||    
T  45550153 ttcgcacctaatcactattcgttatatttctatctaagacactattagatatgagactcctctcacttcccctcaaccactcaccaatgataacaacaaa 45550252  T
Q  748 ataaaaatcaaaacaaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagtc 841  Q
       | ||||||||   |||| | |||| | ||||| |||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  45550253 t--acaatcaaaatggagacgccctccgataaacataatccactcttgcttagaagcttacgagtgattcacaattacaactcaactattagtc 45550344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 704
Target Start/End: Original strand, 17395555 - 17395719
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataaaa-tattagtttgaagtcctacgtaaactacccccgg 638  Q
    |||||||||||||||||| ||||  | |||||||  |||||| | |||||||||| | ||||| | ||||||||||||| ||| | ||||| ||  ||||    
T  17395555 ccagttcggtgcaacgtcgcctaagtgtgggggctatcaagccaggaaggaaatccactataatagtattagtttgaag-cctgcataaacaacatccgg 17395653  T
Q  639 tttacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagac 704  Q
    |||||  | |||||||||||||||| ||||||  |||||||||||| ||||||||| |||||||||    
T  17395654 tttactagattcgcacctaatcacttcccgtgtaatttctatctaagacacacctagatatgagac 17395719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 299 - 368
Target Start/End: Original strand, 10983161 - 10983229
Alignment:
Q  299 ggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatt 368  Q
    |||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10983161 ggagggaaaatcaggattgattagggcaa-actgccagctcatcaagtctggcttttataataaaggatt 10983229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 583
Target Start/End: Complemental strand, 40588850 - 40588739
Alignment:
Q  473 caacacaattaacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggg 571  Q
    |||||||||||| ||  ||||| ||||||| |||||||| || |||||  |||| | |||||| ||| |||||||| |||||||||||||||||||||||    
T  40588850 caacacaattaataataaacaaattaaagtcaattgcaggaagtaaataacacagggtatttgttaatccagttcgatgcaacgtcacctacatctgggg 40588751  T
Q  572 gcattcaagcta 583  Q
    | || |||||||    
T  40588750 gtatccaagcta 40588739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 689
Target Start/End: Original strand, 8944737 - 8944881
Alignment:
Q  545 tcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataaaa-tattagtttgaagtcctacgtaaactacccccggtttac 643  Q
    |||||||||| |||||||||| ||||||    |||  || |||||||||| | ||||| | ||||||||||||| ||| | ||||| ||| | |||||||    
T  8944737 tcggtgcaacatcacctacatttgggggttaccaaattaggaaggaaatctactataatagtattagtttgaag-cctgcataaacaacctctggtttac 8944835  T
Q  644 aggtttcgcacctaatcactacccgtgatatttctatctaaaacac 689  Q
      | ||||||||||||||||||| ||||||||||||||||| ||||    
T  8944836 tagcttcgcacctaatcactacctgtgatatttctatctaagacac 8944881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 764 - 835
Target Start/End: Complemental strand, 8162825 - 8162753
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaacta 835  Q
    ||||||||| ||||||||| |||  || ||||||||||||||||| ||||||||||||  |||||||||||||    
T  8162825 agacacactacaagaaacaaaatttacttttgcttaaaagcttacaagtgattcacaacatacaactcaacta 8162753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 738
Target Start/End: Complemental strand, 28645718 - 28645626
Alignment:
Q  648 ttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgag-acaccc-cccacctcctctcaatcactcactagtgat 738  Q
    |||||| ||||||||||||||||  |||||||||||| ||||||||| ||||||| || ||| | ||| ||| ||||||||||||| ||||||    
T  28645718 ttcgcagctaatcactacccgtgtaatttctatctaagacacacctagatatgagaactccctctcacttcccctcaatcactcaccagtgat 28645626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 764 - 827
Target Start/End: Complemental strand, 21713293 - 21713230
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaa 827  Q
    ||||||||||||| ||||| ||| |||  |||||||||||||||| |||||||||||| |||||    
T  21713293 agacacactccaataaacataatacactcttgcttaaaagcttacaagtgattcacaaatacaa 21713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 776 - 841
Target Start/End: Original strand, 25867403 - 25867469
Alignment:
Q  776 agaaacagaatccacctttgcttaaaagcttacgagtgattcacaa-ttacaactcaactatcagtc 841  Q
    ||||||||||| |||  |||||||||| ||||| |||||||||||| ||||||||||||||| ||||    
T  25867403 agaaacagaattcactcttgcttaaaatcttacaagtgattcacaacttacaactcaactataagtc 25867469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 764 - 821
Target Start/End: Complemental strand, 20476494 - 20476437
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa 821  Q
    ||||||||||||||||| | ||||||   |||||||||||||||||||| ||||||||    
T  20476494 agacacactccaagaaataaaatccaatcttgcttaaaagcttacgagttattcacaa 20476437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 576
Target Start/End: Original strand, 20186609 - 20186642
Alignment:
Q  543 gttcggtgcaacgtcacctacatctgggggcatt 576  Q
    |||||||||| |||||||||||||||||||||||    
T  20186609 gttcggtgcagcgtcacctacatctgggggcatt 20186642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 821
Target Start/End: Complemental strand, 20475211 - 20475154
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa 821  Q
    ||||| ||||||||||| | ||||||   |||||||||||||||||||| ||||||||    
T  20475211 agacatactccaagaaataaaatccaatcttgcttaaaagcttacgagttattcacaa 20475154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 835
Target Start/End: Complemental strand, 28645581 - 28645528
Alignment:
Q  783 gaatccacctttgcttaaaagcttacgagtgattcaca-attacaactcaacta 835  Q
    ||||||||  |||||||||||||||||||||||||| |  ||||||||||||||    
T  28645581 gaatccactcttgcttaaaagcttacgagtgattcaaagcttacaactcaacta 28645528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 28645858 - 28645793
Alignment:
Q  508 gcagaaattaaatggcacaagttatttgctaacca-gttcggtgcaacgtcacctacatctggggg 572  Q
    ||||||| |||| |||||| |||||||  |||||| |||| ||||||||||||||||||| |||||    
T  28645858 gcagaaagtaaaaggcacatgttatttattaaccaagttctgtgcaacgtcacctacatccggggg 28645793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 245 - 367
Target Start/End: Original strand, 31525455 - 31525577
Alignment:
Q  245 ggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaa 344  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31525455 ggctgtgatttagtgtgtggttggcagttgagattaacattaattacagattagggagggaaaaacaggagtgattagggcaacactgccagctcatcaa 31525554  T
Q  345 gtctggcttttataataaaggat 367  Q
    |||||||||||||||||||||||    
T  31525555 gtctggcttttataataaaggat 31525577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 225 - 368
Target Start/End: Original strand, 23538151 - 23538294
Alignment:
Q  225 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcattaattatggattagggagggaaaaacagaagtgattaggg 324  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||| ||||  |  |||||||||||    
T  23538151 tgaaaggtcatcagatcaaaggccgagatttagggtgtggttggcagatgagattagcattaattacagattagggaggaaaaataatgagtgattaggg 23538250  T
Q  325 caacactgccagctcatcaagtctggcttttataataaaggatt 368  Q
    ||||||||| ||||||||||||||| |||| |||||||||||||    
T  23538251 caacactgctagctcatcaagtctgactttaataataaaggatt 23538294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 542 - 841
Target Start/End: Complemental strand, 39668577 - 39668295
Alignment:
Q  542 agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataaaa-tattagtttgaagtcctacgtaaactacccccggtt 640  Q
    |||||||||||||||||  ||||||||||||| | ||| ||| |||||||||  ||||||| | ||||| ||||||| ||| | ||||| ||| || |||    
T  39668577 agttcggtgcaacgtcatttacatctgggggc-tccaacctaggaaggaaattcattataatagtattactttgaag-cctgcataaacaacctcctgtt 39668480  T
Q  641 tacaggtttcgcacctaatcactacccgtgatatttctatctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgattt 740  Q
    |||  | ||||||||||||||||||||||||||||||||||||| |||| | || ||||||||| || | ||| ||| |||||||||||        |      
T  39668479 tactagcttcgcacctaatcactacccgtgatatttctatctaagacactcttagatatgagacccctctcacttcccctcaatcactc--------tac 39668388  T
Q  741 caacaaaataaaaatcaaaacaaagacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaattacaactcaactatcagt 840  Q
    | ||        |||||||| | ||||||||||| ||||||| |||||||  |||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  39668387 ccac--------aatcaaaatagagacacactccgagaaacataatccactcttgcttaaaagcttacaagtgattcacaaatacaattcaactatcagt 39668296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 482 - 738
Target Start/End: Complemental strand, 11865333 - 11865078
Alignment:
Q  482 taacaaataacaagttaaagtaaattgcagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaag 580  Q
    ||||||||||||| ||||||  ||  ||| ||| |||| ||||||||||||||| ||||| ||||||||||||||||  |||| |||||||||   ||||    
T  11865333 taacaaataacaacttaaagataaaggcaaaaagtaaaaggcacaagttatttgttaacccagttcggtgcaacgtcttctacgtctgggggctaccaag 11865234  T
Q  581 ctatgaaggaaatcgattataaaa-tattagtttgaagtcctacgtaaactacccccggtttacaggtttcgcacctaatcactacccgtgatatttcta 679  Q
    | | |||| ||||  | ||||| | | ||||||||||| | | ||||||  ||| ||| | |||  | |||||||||||||||||||| ||  |||||||    
T  11865233 ccaggaagaaaattcactataatagtgttagtttgaag-catgcgtaaaa-acctccgttctactagcttcgcacctaatcactacccatgtaatttcta 11865136  T
Q  680 tctaaaacacacctaaatatgagacaccccccacctcctctcaatcactcactagtgat 738  Q
    ||||| ||||||||| ||||||||| || | ||| ||| |||||||||| |||||||||    
T  11865135 tctaagacacacctagatatgagacccctctcacttccgctcaatcact-actagtgat 11865078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 509 - 571
Target Start/End: Original strand, 24608673 - 24608736
Alignment:
Q  509 cagaaattaaatggcacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggg 571  Q
    |||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  24608673 cagaaagtaaaaggcacaagttatttgttaacccagttcggtgcaacgtcacctacgtctgggg 24608736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 764 - 841
Target Start/End: Original strand, 12492839 - 12492918
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcac--aattacaactcaactatcagtc 841  Q
    ||||||||||  ||||||||||||| |  |||||||||||||||  ||||||||||  || |||||||||||||||||||    
T  12492839 agacacactctgagaaacagaatccgctcttgcttaaaagcttataagtgattcacaaaaatacaactcaactatcagtc 12492918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 575
Target Start/End: Original strand, 12607263 - 12607316
Alignment:
Q  523 cacaagttatttgctaa-ccagttcggtgcaacgtcacctacatctgggggcat 575  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||||| |||||    
T  12607263 cacaagatatttgataatccagttcggtgcaacgtcacctacatctggaggcat 12607316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 796 - 849
Target Start/End: Complemental strand, 11865020 - 11864966
Alignment:
Q  796 cttaaaagcttacgagtgattcaca-attacaactcaactatcagtcaaactcta 849  Q
    ||||||||||||||||||||||| |  |||||||||||||| ||||| |||||||    
T  11865020 cttaaaagcttacgagtgattcaaagcttacaactcaactaacagtccaactcta 11864966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 764 - 814
Target Start/End: Original strand, 50908074 - 50908124
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtga 814  Q
    ||||||||||| ||||| | |||||||  ||||||||||||||||||||||    
T  50908074 agacacactccgagaaataaaatccactcttgcttaaaagcttacgagtga 50908124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 573
Target Start/End: Original strand, 13268845 - 13268878
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggc 573  Q
    ||||||||||||||| ||||||||||||||||||    
T  13268845 ccagttcggtgcaacttcacctacatctgggggc 13268878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 5189 - 5099
Alignment:
Q  278 ttagcattaattatggattagggagggaaaaacagaagtgattagggcaacactgccagctcatcaagtctggcttttataataaaggatt 368  Q
    |||||||||||||||||||| ||||| ||||  || |||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||    
T  5189 ttagcattaattatggattaaggaggaaaaataaggagtgattaggacaacactgccagcacatcaaatctggcttttatagtaaaggatt 5099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 5383 - 5323
Alignment:
Q  225 tgaaaggtcatcagatcaaaggctgagatttagagtgtggttggcagttgagattagcatt 285  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||    
T  5383 tgaaaggtcatcagatcaaaggctgagatttagggtgtggttggcagatgggatttgcatt 5323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 622
Target Start/End: Complemental strand, 8831 - 8730
Alignment:
Q  523 cacaagttatttgctaacc-agttcggtgcaacgtcacctacatctgggggcattcaagctatgaaggaaatcgattataa-aatattagtttgaagtcc 620  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||||||||| ||| ||||| | |||| ||||| | ||||| | ||||||||||||||||    
T  8831 cacaagatatttgttaacccagtacggtgcaacgtcacctacatctggggacatccaagccaggaagaaaatctactataatagtattagtttgaagtcc 8732  T
Q  621 ta 622  Q
    ||    
T  8731 ta 8730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 764 - 821
Target Start/End: Original strand, 5995 - 6052
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa 821  Q
    |||||| |||| ||||| |||||||||| ||||||||||||||| |||||||||||||    
T  5995 agacactctccgagaaatagaatccaccattgcttaaaagcttatgagtgattcacaa 6052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 764 - 841
Target Start/End: Complemental strand, 27638 - 27559
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcac--aattacaactcaactatcagtc 841  Q
    ||||||||||  ||||||||||||| |  |||||||||||||||  ||||||||||  || |||||||||||||||||||    
T  27638 agacacactctgagaaacagaatccgctcttgcttaaaagcttataagtgattcacaaaaatacaactcaactatcagtc 27559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 764 - 821
Target Start/End: Original strand, 13831 - 13888
Alignment:
Q  764 agacacactccaagaaacagaatccacctttgcttaaaagcttacgagtgattcacaa 821  Q
    ||||||||||| ||||| | |||||||  || ||||||| ||||||||||||||||||    
T  13831 agacacactccgagaaataaaatccactcttccttaaaatcttacgagtgattcacaa 13888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 573
Target Start/End: Complemental strand, 2238 - 2205
Alignment:
Q  540 ccagttcggtgcaacgtcacctacatctgggggc 573  Q
    ||||||||||||||| ||||||||||||||||||    
T  2238 ccagttcggtgcaacttcacctacatctgggggc 2205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University