View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5014-Insertion-2 (Length: 635)
Name: NF5014-Insertion-2
Description: NF5014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5014-Insertion-2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 432 - 635
Target Start/End: Original strand, 52580058 - 52580261
Alignment:
| Q |
432 |
cgacggaactagagccaaatatttagtatagctttggtcttaaagaaaatgtgaaatagaagaatgttggcccaaatacatagcatcaaccgtcgcctag |
531 |
Q |
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| T |
52580058 |
cgacggaactagagccaaatatttagtatagctttggtcttaaagaaaatgtgaaatagaaaaatgttggcccaaatacatagcatcaaccgtcacctag |
52580157 |
T |
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| Q |
532 |
ttgacatgaaacaagaagacgtttctttcgattatctgtataatgtatagagagacaaattaacagttacttgtataaattgtatttacataagtttata |
631 |
Q |
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| T |
52580158 |
ttgacatgaaacaagaagacgtttctttcgattatctgtataatgtatagagagacaaattaacagttacttgtataaattgtatttacataagtttata |
52580257 |
T |
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| Q |
632 |
aaat |
635 |
Q |
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|||| |
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| T |
52580258 |
aaat |
52580261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 52579681 - 52579870
Alignment:
| Q |
7 |
aacactaacatgagatatcacaagttgtagatgattgtgtttgttaatttatttgattaaatgttctatttctaaccggtgaaaataaatcataagaaaa |
106 |
Q |
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| T |
52579681 |
aacactaacatgagatatcacaagttgtagatgattgtgtttgttaatttatttgattaaatgttctatttctaactggtgaaaataaatcataagaaaa |
52579780 |
T |
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| Q |
107 |
atatatgtttaaagaggtcaattcctctaaccgaattcaactatcttaaagaattagtttttgcaattgtgagagaaataatcttgactt |
196 |
Q |
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| T |
52579781 |
atatatgtttaaagaggtcaattcctctaaccgaattcaactatcttaaagaattagtttttgcaattgtgagagaaataatcttgactt |
52579870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 271 - 375
Target Start/End: Original strand, 52579882 - 52579986
Alignment:
| Q |
271 |
tgccacttgcaccgttggcattgaaagatagctgtacttcatgcattgctgcaatttcgtcatattttccaaagctgaactttagtgctaaacatagtct |
370 |
Q |
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| T |
52579882 |
tgccacttgcaccgttagcattgaaagatagctatacttcatgcattgctacaatttcgtcatattttccaaagctgaactttagtgctaaacatagtct |
52579981 |
T |
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| Q |
371 |
atatt |
375 |
Q |
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||||| |
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| T |
52579982 |
atatt |
52579986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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