View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5014-Insertion-3 (Length: 542)
Name: NF5014-Insertion-3
Description: NF5014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5014-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 542
Target Start/End: Original strand, 55016265 - 55016797
Alignment:
| Q |
8 |
ataaggaaacggaaagtttacgtgaaaagtgatggaaaatgtggagatcccgaaatggtaacttccgactaatcataactaacttttaactactttgtat |
107 |
Q |
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| T |
55016265 |
ataaggaaacggaaagtttacgtggaaagtgatggaaaatgtggagatcccgaaatggtaacttccgactaatcataactaacttttaactactttgtat |
55016364 |
T |
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| Q |
108 |
ttggtactacaaattttggaggtaatataattaactctctttgaccatttatgtcgaaaatataaacaaaaattggtcaaataaagttaatgtgcttgtc |
207 |
Q |
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| T |
55016365 |
ttggtactacaaattttggaggtaatataattaactctctttgaccatttatgtcgaaaatataaacaaaaattggtcaaataaagttaatgtgcttgtc |
55016464 |
T |
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| Q |
208 |
tagattaaacatcaacnnnnnnnnnnaattaatctttgcatatgtttgagaccaaattaaaatttgttataagtattttaaagaatattgaactaattct |
307 |
Q |
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| T |
55016465 |
tagattaaacatcaactttttttt--aattaatctttgcatatgtttgagaccaaattaaaatttgttatatgtattttaaagaatattgaactaattct |
55016562 |
T |
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| Q |
308 |
aattaatatgcaactatatgtgacaggtgagtgccattggtgctgcttatgtggattcattgtttggtttggaagtgcctagtagagggatattgggaga |
407 |
Q |
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| T |
55016563 |
aattaatatgcaactatatgtgacaggtgagtgccattggtgctgcttatgtggattcattgtttggtttggaagtgcctagtagagggatattgggaga |
55016662 |
T |
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| Q |
408 |
cgaggaattggttacgctcgtgtcagagattatcagtgctggtactgacacgagcgcaacggccattgaatgggctttgcttcatttagtgatggatcaa |
507 |
Q |
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| T |
55016663 |
cgaggaattggttacgctcgtgtcagagattatcagtgctggtactgacacgagcgcaacggccattgaatgggctttgcttcatttagtgatggatcaa |
55016762 |
T |
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| Q |
508 |
gagattcaagagaggttgtatagagaaattgttga |
542 |
Q |
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| T |
55016763 |
gagattcaagagaggttgtatagagaaattgttga |
55016797 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 7974890 - 7974854
Alignment:
| Q |
164 |
aaaatataaacaaaaattggtcaaataaagttaatgt |
200 |
Q |
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| T |
7974890 |
aaaatataaacaaaaattggtcaataaaagttaatgt |
7974854 |
T |
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