View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5014-Insertion-4 (Length: 467)
Name: NF5014-Insertion-4
Description: NF5014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5014-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 45549670 - 45549211
Alignment:
| Q |
8 |
cacaacacattctagtgttgagtggagggtaagctatctgaatagggtttatcacaaaattatatataatgcaaataatagaatttaccacaatcttgat |
107 |
Q |
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| T |
45549670 |
cacagcacattctagtgttgagtggaaggtaagctatctgaatagggtttatcacaaaattatatataatgcaaataatagaatttaccacaatcttgat |
45549571 |
T |
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| Q |
108 |
tt-aagtcttaaccgtcaatttcaaacttaaaattacannnnnnnnncttcaacattatttacaatagtaataataat---gataataatatcgataaaa |
203 |
Q |
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| T |
45549570 |
tttaagtcttaaccgtcaatttcaaacttaaaattacatttttt----tttaacattatttacaataataataataataatgataataatatcgataaaa |
45549475 |
T |
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| Q |
204 |
caaatactgaggccttaagatttcacaacatggatgtaactaaaaaacaacgtccacgagagaacttccgaaattaactcacatgtgacaaccatgatgc |
303 |
Q |
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| T |
45549474 |
caaatactgaggccttaagatttcacaacatggatgtaactaaaaaacaacgtccacgagagaacttccaaaattaactcacatgtgacaaccatgatgc |
45549375 |
T |
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| Q |
304 |
agccaacaataatgttgaaactagaaaaccctctaacaacgacaacaatggatgattcagaccccaaaatttgccttagaggaaaaacgagaatctaaga |
403 |
Q |
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| T |
45549374 |
agccaacaataatgttgaaactagaaaaccctctaacaacgacaacaatggatgattcagactccaaaatttgccttagaggaaaaacgagaatctaaga |
45549275 |
T |
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| Q |
404 |
ttgccctatcgtagaatgcattcaccattagtcaatcaagataaaggcttaaataaatgcaacc |
467 |
Q |
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| T |
45549274 |
ttgccctatcgtagaatgcattcaccattagtcaatcaagatgaaggcttaaataaatgcaacc |
45549211 |
T |
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