View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5014-Insertion-9 (Length: 169)
Name: NF5014-Insertion-9
Description: NF5014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5014-Insertion-9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 6e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 34291390 - 34291551
Alignment:
| Q |
8 |
tttctaacacttttgtatcatccaaaataagtgatattgcgttgatatcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaattt |
107 |
Q |
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| T |
34291390 |
tttctaacacttttgtatcatccaaaataagtgatattgcgttgatctcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaattt |
34291489 |
T |
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| Q |
108 |
atcttctgcatttttaaatgttatagatataacaacattgcgcacaatatcgtgcatcttca |
169 |
Q |
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| T |
34291490 |
atcttctgcatttttaaatgctatagatataacaacattgcgcacaatatcgtgcatcttca |
34291551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 34565878 - 34566039
Alignment:
| Q |
8 |
tttctaacacttttgtatcatccaaaataagtgatattgcgttgatatcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaattt |
107 |
Q |
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| T |
34565878 |
tttctaactctttagtatcatccaaaataagtgatattgcattgatctcgttcaatttctcttcttttagactcttaaaggtgtactttaccatgaattt |
34565977 |
T |
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| Q |
108 |
atcttctgcatttttaaatgttatagatataacaacattgcgcacaatatcgtgcatcttca |
169 |
Q |
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| T |
34565978 |
atcttctgcatttttaaatgctactgatataacaacattacgcacaatatcatgcatcttca |
34566039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 3e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 15895579 - 15895727
Alignment:
| Q |
19 |
tttgtatcatccaaaataagtgatattgcgttgatatcgctcaatttatcttcttttagactcttaaaggtgtattgtaccataaatttatcttctgcat |
118 |
Q |
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| T |
15895579 |
tttgaatcatccaagataagtgatattgctttgatgtcattcaatttctcttcttttaaactcttaaagttgtattgcaccataaatttatgttcttcac |
15895678 |
T |
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| Q |
119 |
ttttaaatgttatagatataacaacattgcgcacaatatcgtgcatctt |
167 |
Q |
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| T |
15895679 |
ttttaaataaaaatgatataacaacatttcgcacaatatcatgcatctt |
15895727 |
T |
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