View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5014_high_2 (Length: 267)

Name: NF5014_high_2
Description: NF5014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5014_high_2
NF5014_high_2
[»] chr7 (2 HSPs)
chr7 (7-139)||(11504703-11504835)
chr7 (203-256)||(11504586-11504639)
[»] chr8 (2 HSPs)
chr8 (7-119)||(42312639-42312751)
chr8 (203-254)||(42312827-42312878)
[»] chr6 (5 HSPs)
chr6 (7-119)||(20909525-20909637)
chr6 (7-119)||(20923973-20924085)
chr6 (14-138)||(27445339-27445463)
chr6 (203-254)||(20909713-20909764)
chr6 (203-254)||(20924161-20924212)
[»] chr1 (2 HSPs)
chr1 (7-119)||(41326423-41326532)
chr1 (203-254)||(41326607-41326658)
[»] scaffold0003 (2 HSPs)
scaffold0003 (14-138)||(35225-35349)
scaffold0003 (14-138)||(41895-42019)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 11504835 - 11504703
Alignment:
Q  7 atttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504835 atttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttt 11504736  T
Q  107 tagaatcatcaaaaacatattgcagatttaact 139  Q
    ||||||||||||||||| |||||||||||||||    
T  11504735 tagaatcatcaaaaacagattgcagatttaact 11504703  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 11504639 - 11504586
Alignment:
Q  203 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcat 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504639 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcat 11504586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 42312639 - 42312751
Alignment:
Q  7 atttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttt 106  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||| | ||||||    
T  42312639 atttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaacgtgatgttt 42312738  T
Q  107 tagaatcatcaaa 119  Q
    | |||||||||||    
T  42312739 tggaatcatcaaa 42312751  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 42312827 - 42312878
Alignment:
Q  203 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttc 254  Q
    |||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||    
T  42312827 caatgaacacagtggcatcaagtaagacgtcttcgattacagagagatcttc 42312878  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 20909525 - 20909637
Alignment:
Q  7 atttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttt 106  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||| || ||||||    
T  20909525 atttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaatatgatgttt 20909624  T
Q  107 tagaatcatcaaa 119  Q
    | |||||||||||    
T  20909625 tggaatcatcaaa 20909637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 20923973 - 20924085
Alignment:
Q  7 atttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttt 106  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||| || ||||||    
T  20923973 atttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagcaaatatgatgttt 20924072  T
Q  107 tagaatcatcaaa 119  Q
    | |||||||||||    
T  20924073 tggaatcatcaaa 20924085  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 27445463 - 27445339
Alignment:
Q  14 ttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttttagaatc 113  Q
    ||||||||| | ||||||||||| ||||||||||||||||| ||||||||||| |   ||||||||||||||||||||| |||||| || |||| |||||    
T  27445463 ttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatc 27445364  T
Q  114 atcaaaaacatattgcagatttaac 138  Q
     ||||| | | ||||||||||||||    
T  27445363 ctcaaacaaaaattgcagatttaac 27445339  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 20909713 - 20909764
Alignment:
Q  203 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttc 254  Q
    |||||||| |||||||||||||| |||||||||| |||||| ||| ||||||    
T  20909713 caataaacacagtggcatcaagtaagacgtcttctattacagagagatcttc 20909764  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 20924161 - 20924212
Alignment:
Q  203 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttc 254  Q
    |||||||| |||||||||||||| |||||||||| |||||| ||| ||||||    
T  20924161 caataaacacagtggcatcaagtaagacgtcttctattacagagagatcttc 20924212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 41326423 - 41326532
Alignment:
Q  7 atttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttt 106  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||| |   || ||||||    
T  41326423 atttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagca---atgatgttt 41326519  T
Q  107 tagaatcatcaaa 119  Q
    | |||||||||||    
T  41326520 tggaatcatcaaa 41326532  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 41326607 - 41326658
Alignment:
Q  203 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttc 254  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||| ||||||    
T  41326607 caataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttc 41326658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 35225 - 35349
Alignment:
Q  14 ttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttttagaatc 113  Q
    ||||||||| | || |||||||||||||||||||||||||| ||||||||||| |   ||||||||||||||||||||| |||||| || |||| |||||    
T  35225 ttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatc 35324  T
Q  114 atcaaaaacatattgcagatttaac 138  Q
     ||||| | | ||||||||||||||    
T  35325 ctcaaacagaaattgcagatttaac 35349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 41895 - 42019
Alignment:
Q  14 ttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaacataatgttttagaatc 113  Q
    ||||||||| | ||||||||||| ||||||||||||||||| ||||||||||| |   ||||||||||||||||||||| |||||| || |||| |||||    
T  41895 ttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtgcataggagcaaacatgatattttggaatc 41994  T
Q  114 atcaaaaacatattgcagatttaac 138  Q
     ||||| | | ||||||||||||||    
T  41995 ctcaaacaaaaattgcagatttaac 42019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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