View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5014_high_3 (Length: 247)
Name: NF5014_high_3
Description: NF5014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5014_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 1849411 - 1849618
Alignment:
| Q |
24 |
attacaaaagggtttaacacccaaatagacgcatattaactctgaataaatacatacatgaaatctctaagcacatgtttagttagaagagatgacatgt |
123 |
Q |
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| T |
1849411 |
attacaaaagggtttaacacccaaatagacgcatattaactctgaataaatacatacatgaaatctctaagcacatgtttagttagaagagatgacatgt |
1849510 |
T |
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| Q |
124 |
aagaagaaaataaaatagaacgagaagatcacaaaagaagagatttgcaactttgatgcatttgattgaacacttttcatgtgccatcgggccatacaat |
223 |
Q |
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| T |
1849511 |
aagaagaaaaaaaaatagaacgagaagatcacaaaagaagagatttgcaactttgatgcatttgattgaacacttttcatgtgccatcgggccatacaat |
1849610 |
T |
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| Q |
224 |
agtattgg |
231 |
Q |
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|||||||| |
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| T |
1849611 |
agtattgg |
1849618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 1836877 - 1836920
Alignment:
| Q |
189 |
ttgaacact-tttcatgtgccatcgggccatacaatagtattgg |
231 |
Q |
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| T |
1836877 |
ttgaacactctttcatgtgccatcgggccatacaatagtattgg |
1836920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 1836839 - 1836879
Alignment:
| Q |
130 |
aaaataaaatagaacgagaagatcacaaaagaagagatttg |
170 |
Q |
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| T |
1836839 |
aaaaaaaaatagaacgaaaagatcacaaaagaagagatttg |
1836879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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