View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5014_low_1 (Length: 575)
Name: NF5014_low_1
Description: NF5014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5014_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 230 - 565
Target Start/End: Original strand, 43033576 - 43033913
Alignment:
| Q |
230 |
gacaagagaataagatgaacacaaattttttatgtggttcagctttaaagacatactccaccgaacagagagcaacaatgaatccactatgagcataaac |
329 |
Q |
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| T |
43033576 |
gacaagagaataagatgaacacaaattttttatgtggttcagctttaaagacatactccaccggacagagagcaacaatgaatccactatgagcataaac |
43033675 |
T |
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| Q |
330 |
aaaccagtacaataaagtttacatggtcccttgctttccattgttgagaaacagcccaacaaaaatctctaaatctctttcga-cctctattttcactct |
428 |
Q |
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| T |
43033676 |
aaaccagtacaataaagtttacatggtcccttgctttccattgttgagaaacagcccaacaaaaatctctaaatccctttcgaccctctattttcactct |
43033775 |
T |
|
| Q |
429 |
tcctttgatttctcagtctctctaatattcttttgtcatgtagagagtttacatgaattcctcacttcacacctcaaagtgtttcctaagattactccaa |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43033776 |
tcctttgatttctcagtctctctaatattcttttgtcatgtagagagtttacatgaattcctcacttcacacctcaaagtgtttcctaagattactccaa |
43033875 |
T |
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| Q |
529 |
gattattctcc-aagtctacccacagagatgccctatg |
565 |
Q |
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| T |
43033876 |
gattattctccaaagtctacccacagagatgccctatg |
43033913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 43033370 - 43033453
Alignment:
| Q |
19 |
tttgttgcattcctccaatactgacatctctcacttaagaaaatatattctaacctgttatttgttgtagaatgaaatggtctg |
102 |
Q |
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| T |
43033370 |
tttgttgcattcctccaatgctgacatctctcacttaagaaaatatattctaacctgttatttgttgtagaatgaaatggtctg |
43033453 |
T |
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