View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5014_low_3 (Length: 355)
Name: NF5014_low_3
Description: NF5014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5014_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 29447567 - 29447236
Alignment:
| Q |
16 |
aaaatcttcagtagcaagttggtctaagcctgatcagaatcataaaggaaggaattctgaatctttccatgcacataagttagcaagatccaaaccctcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447567 |
aaaatcttcagtagcaagttggtctaagcctgatcagaatcataaaggaaggaattctgaatctttccatgcacataagttagcaagatccaaaccctcc |
29447468 |
T |
|
| Q |
116 |
attgcgacgagagaaaagccactgccccatcagatggtaataaaaccaactctattggaccagagatcaagtgacataaaggtgaattcccatcaacata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447467 |
attgcgacgagagaaaagccactgccccatcagatggtaataaaaccaactctattggaccagagatcaagtgacataaaggtgaattcccatcaacata |
29447368 |
T |
|
| Q |
216 |
gagacagagactggccagttttggatcagagaggaactcataagataggtcatgttgaacctttgaagaccatggttcaaccacaacttcatgaacaaga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29447367 |
gagacagagactggccagttttggatcagagaggaactcataagataggtcatgttgaacctttgaagaccatggttcaaccacaacttcatgaacaaga |
29447268 |
T |
|
| Q |
316 |
ggaatcaagctcaaactcagactcttcttctc |
347 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
29447267 |
ggaatcaatctcaaactcagactcttcttctc |
29447236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University