View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015-Insertion-1 (Length: 1160)
Name: NF5015-Insertion-1
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 356 - 896
Target Start/End: Complemental strand, 29748240 - 29747698
Alignment:
| Q |
356 |
tataagtgttcttgtgatgtttaatttggattgccatgcttgttgaatatgttttctgagtcctctaggctagaggcaagttggcatgtgaaattggaat |
455 |
Q |
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| T |
29748240 |
tataagtgttcttgtgatgtttaatttggattgccatgcttgttgaatatgttttctgagtcctctaggctagaggcaagttggcatgtgaaattggaaa |
29748141 |
T |
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| Q |
456 |
gaaaattgaaaagcacttttggaagctgttctttctggattctgccatacatt-ttttaaaatttatttctgaaggggcagaagtaatgtgtaatcgatt |
554 |
Q |
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| T |
29748140 |
gaaaattgaaaagcacttttggaagctgttctttctggattctgccatacattgttttaaaatttatttctgaagcggcagaagtaatgtgtaatcgatt |
29748041 |
T |
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| Q |
555 |
acacccc-tatgtaatcgattacatagtgctgaaaacttaaaaatttgctttttagcccgattcacttgttccaaccttttgtgaaatgagtacggactc |
653 |
Q |
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| T |
29748040 |
acaccccctatgtaatcgattacacagtgctgaaaacttaaaaatttgctttttagcccgattcacttgttccaaccttttgtgaaatgagtacggactt |
29747941 |
T |
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| Q |
654 |
gcccctaaccccgaacaattatttttaaggcaaaccaagttaagcaaacgagtaacattatatacattcatgtgagacttaatttataaatatgactagc |
753 |
Q |
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| T |
29747940 |
gcccctaaccccgaacaattatttttaaggcaaaccaagttaagcaaacgagtaacattatatacattcatgtgagacttaatttataaatatgactagc |
29747841 |
T |
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| Q |
754 |
ttattattaagcatcaaatagagaattaatcagaaattattacagagacatgtaagatgtatgtcacagaactatacagatatatatgtatgactgttta |
853 |
Q |
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| T |
29747840 |
ttattattaagcatcaaatagagaattaatcagaaattattacagagacatgtaagatatatgtcacagaactatacagatatatatgtatgactgttta |
29747741 |
T |
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| Q |
854 |
atcttgggagtgatatatgagtaccacatgatcagaacctgaa |
896 |
Q |
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| T |
29747740 |
atcttgggagtgatatatgagtaccacatgatcagaacctgaa |
29747698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 80 - 179
Target Start/End: Complemental strand, 29748337 - 29748238
Alignment:
| Q |
80 |
ttaaatgggcaaaaacaaacttttggtgcaaggattgaaatggtaatgtttgtacatgctgtttgcttagagaaggagtggttttagagctgttatgtat |
179 |
Q |
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| T |
29748337 |
ttaaatgggcaaaaacaaacttttggtgcaaggattgaaatggtaatgtttgtacatgctgtttgcttagagaaagagtggttttagagctgttatgtat |
29748238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 895 - 1034
Target Start/End: Complemental strand, 29747674 - 29747536
Alignment:
| Q |
895 |
aataaactcagttatgaatcagatatacttacacttatgatcagaaaacatttcaggatatatgttactaaaattatgttcagat-attataatcagtta |
993 |
Q |
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| T |
29747674 |
aataaactcagttatgaatcagatatacttacacttatgatcag-agacatttca-gatatatgttactaaaattatgttcagataattataatcagtta |
29747577 |
T |
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| Q |
994 |
gttggtggctcagaaaaagct-cagattattctggataggtc |
1034 |
Q |
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| T |
29747576 |
agttgtggctcag-aaaagctccagattattctggataggtc |
29747536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 29765637 - 29765558
Alignment:
| Q |
8 |
atttcacattaaatatgt---tatctctagtatctt-cataattaaatactgtcactgaatcttgtactttgatgtttaa |
83 |
Q |
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| T |
29765637 |
atttcacattaaatatgtcgttatctctagcatctttcataattaaatattgccactaaatcttgtactttgatgtttaa |
29765558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 29750064 - 29750017
Alignment:
| Q |
36 |
atcttcataattaaatactgtcactgaatcttgtactttgatgtttaa |
83 |
Q |
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| T |
29750064 |
atcttcataattaaatatcgtcattgaatcttgtactttgatttttaa |
29750017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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