View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5015-Insertion-10 (Length: 416)
Name: NF5015-Insertion-10
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015-Insertion-10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Complemental strand, 32326276 - 32325869
Alignment:
| Q |
7 |
acttacttggtggtgtttgagtaggtgctgcagctccagcaaaatcacaactaccttgaacattaccctttctctggtaatagctattaacagcatagtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32326276 |
acttacttggtggtgtttgagtaggtgctgcagctccagcaaaatcacaactaccttgaacattaccctttctctggtaatagctattaacagcatagtt |
32326177 |
T |
|
| Q |
107 |
acagtgatctttcacagtgttgggttggaaacaaggtccattttggagaatagggctacaatcagcaccagttccacaagcataatcaattgccttctga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32326176 |
acagtgatctttcacagtgttgggttggaaacaaggtccattttggagaatagggctacaatcagcaccagttccacaagcataatcaattgccttctga |
32326077 |
T |
|
| Q |
207 |
agaagttgactagagacaccatctttgcatacacaatataaagcacctattcaacaaaaataatttgtcaaaacacaccaaaatttcatctttttcttag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32326076 |
agaagttgactagagacaccatctttgcatacacaatataaagcacctattcaacaaaaataatttgtcaaaacacaccaaaatttcatctttttcttag |
32325977 |
T |
|
| Q |
307 |
aataattgtaataagatgcatgcaatttttcctctgtttcttnnnnnnnnnnnnncaaaggtgaaaataatatttcatacagaaaacctttcatacaatg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32325976 |
aataattgtaataagatgcatgcaatttttcctctgtttctt--aaaaaaaaaaacaaaggtgaaaataatatttcatacagaaaacctttcatacaatg |
32325879 |
T |
|
| Q |
407 |
aatttaaaca |
416 |
Q |
| |
|
|||||||||| |
|
|
| T |
32325878 |
aatttaaaca |
32325869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 19552153 - 19551986
Alignment:
| Q |
42 |
ccagcaaaatcacaactaccttgaacattaccctttctctggtaatagctattaacagcatagttacagtgatctttcacagtgttgggttggaaacaag |
141 |
Q |
| |
|
||||||||||||||| |||||| | | ||||||| ||||| ||||||||||||||||||| || ||||||||||| | ||| || || || ||||| | |
|
|
| T |
19552153 |
ccagcaaaatcacaagctccttgagcttgaccctttttctggaaatagctattaacagcataattgcagtgatctttaatagtatttggctgaaaacatg |
19552054 |
T |
|
| Q |
142 |
gtccattttggagaatagggctacaatcagcaccagttccacaagcataatcaattgccttctgaaga |
209 |
Q |
| |
|
| |||||||| |||| | |||||||||| |||| |||||||||||||| ||||| || |||||| |
|
|
| T |
19552053 |
gcccattttgctgaatttgtgtacaatcagctccagcaccacaagcataatctattgctttttgaaga |
19551986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University