View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5015-Insertion-11 (Length: 382)
Name: NF5015-Insertion-11
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015-Insertion-11 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0057 (1 HSPs) |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 167 - 370
Target Start/End: Original strand, 36902969 - 36903174
Alignment:
| Q |
167 |
aggtaagggctttt--cctatacgttcgtgctaggaataagtttatgttatgaaataaatattataatatttaaccattaaaaaggtaaagttatgcatt |
264 |
Q |
| |
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|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
36902969 |
aggtaagggctttttccccatacgttcgtgttaggaataagtttatgttatgaaataaatattagaatatttaaccattaaaaaggtaatgttatgcatt |
36903068 |
T |
|
| Q |
265 |
gtgtttgagttgtgctttgatgtatgtgtgtgattgactatgattgaaaggttctgtgatttatgtgtgtcattgattgtgaaatggaatattgtgttag |
364 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||||||||||||||| |||||||| |
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| T |
36903069 |
gtgtttgagttgttctttgatgtatgtgtgtgattgactatgattgagagtttctgtgatttatgggtgtgattgattgtgaaatggaatagtgtgttag |
36903168 |
T |
|
| Q |
365 |
ttttga |
370 |
Q |
| |
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|||||| |
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|
| T |
36903169 |
ttttga |
36903174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 21221937 - 21221840
Alignment:
| Q |
264 |
tgtgtttgagttgtgctttgatgtatgtgtgtgattgactatgattgaaaggttctgtgatttatgtgtgtcattgattgtgaaatggaatattgtgtt |
362 |
Q |
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|||||||||| ||| ||||||| |||||||||||||||||||| || | | ||||| || |||||| || ||||| |||||||||| || |||| |||| |
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| T |
21221937 |
tgtgtttgagatgttctttgatctatgtgtgtgattgactatg-ttaagatgttctatgttttatgcgtttcattaattgtgaaattgagtattatgtt |
21221840 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 167 - 370
Target Start/End: Original strand, 31874963 - 31875168
Alignment:
| Q |
167 |
aggtaagggctttt--cctatacgttcgtgctaggaataagtttatgttatgaaataaatattataatatttaaccattaaaaaggtaaagttatgcatt |
264 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |
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| T |
31874963 |
aggtaagggctttttccccatatgttcgtgctaggaataagtttatgttatgaaataaatattagaatatttaaccattaaaaaggtaatgttatgtttt |
31875062 |
T |
|
| Q |
265 |
gtgtttgagttgtgctttgatgtatgtgtgtgattgactatgattgaaaggttctgtgatttatgtgtgtcattgattgtgaaatggaatattgtgttag |
364 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
31875063 |
gtgtttgagttgttctttgatgtatgtgtgtgattgactatgattgagaggttctgtgatttatgtgtgtgattgactgtgaaatggaatagtgtgttag |
31875162 |
T |
|
| Q |
365 |
ttttga |
370 |
Q |
| |
|
|||||| |
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|
| T |
31875163 |
ttttga |
31875168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 22625004 - 22625059
Alignment:
| Q |
122 |
cggaatcaatcctagg-acgtcttgtgtcgaaggagaatcactcaaaggtaagggc |
176 |
Q |
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|||||||||||||||| |||||||||||||| ||| | |||||||||||||||||| |
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|
| T |
22625004 |
cggaatcaatcctagggacgtcttgtgtcgacggaaagtcactcaaaggtaagggc |
22625059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 10050562 - 10050731
Alignment:
| Q |
7 |
agcttacgccaatcatcattgccatcaacatcatctcaccaaaattctaagtctcggtccactatactctttagaaggttttaggagccttaaaggcttg |
106 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
10050562 |
agcttacgcccatcatcattgccatcaacatcatctcaccaaaattctaagtctcggtccactatactctttagaaggtcttaggagccttaaagacttg |
10050661 |
T |
|
| Q |
107 |
cttgtgcgttcagttcggaatcaatcctaggacgtcttgtgtcgaaggagaatcactcaaaggtaagggc |
176 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10050662 |
cttgtgcgttcggttcggaatcaatcctagtacgtcttgtgtcgaaggagaatcactcaaaggtaagggc |
10050731 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 166 - 370
Target Start/End: Complemental strand, 35409776 - 35409570
Alignment:
| Q |
166 |
aaggtaagggctttt--cctatacgttcgtgctaggaataagtttatgttatgaaataaatattataatatttaaccattaaaaaggtaaagttatgcat |
263 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||| |
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| T |
35409776 |
aaggtaagggctttttccccatacattcgtgctaggaataagtttatgttatgaaacaaatattagaatatttaaccattaaaaagataatgttatgcat |
35409677 |
T |
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| Q |
264 |
tgtgtttgagttgtgctttgatgtatgtgtgtgattgactatgattgaaaggttctgtgatttatgtgtgtcattgattgtgaaatggaatattgtgtta |
363 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
35409676 |
tgtgtttgagttgttctttgatgtatgtgtgtgattgactatgattaagaggttatgtgatttatgtgtgtgattgattgtgaaatggaataatgtgtta |
35409577 |
T |
|
| Q |
364 |
gttttga |
370 |
Q |
| |
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||||||| |
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| T |
35409576 |
gttttga |
35409570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 166 - 355
Target Start/End: Complemental strand, 79039 - 78848
Alignment:
| Q |
166 |
aaggtaagggctttt--cctatacgttcgtgctaggaataagtttatgttatgaaataaatattataatatttaaccattaaaaaggtaaagttatgcat |
263 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
79039 |
aaggtaagggcttttttcccatacgttcgtgctaggaataagtttatgttatgaaataaatattagaatatttaaccattaaaaaggtaatgttatgcat |
78940 |
T |
|
| Q |
264 |
tgtgtttgagttgtgctttgatgtatgtgtgtgattgactatgattgaaaggttctgtgatttatgtgtgtcattgattgtgaaatggaata |
355 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |
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|
| T |
78939 |
tgtgttggagttgttctttgatgtatgtgtgtgattgactatgattgagaggttctgtgatttatgtgtttgattgattgtgaaatggaata |
78848 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 76680 - 76511
Alignment:
| Q |
7 |
agcttacgccaatcatcattgccatcaacatcatctcaccaaaattctaagtctcggtccactatactctttagaaggttttaggagccttaaaggcttg |
106 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
76680 |
agcttacgcccatcatcattgccatcaacatcatctcaccaaaattctaagtctcggtccactatactctttagaaggtcttaggagccttaaagacttg |
76581 |
T |
|
| Q |
107 |
cttgtgcgttcagttcggaatcaatcctaggacgtcttgtgtcgaaggagaatcactcaaaggtaagggc |
176 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
76580 |
cttgtgtgttccgttcggaatcaatcctaggacgtcttgtgtcgaaggagaatcacttaaaggtaagggc |
76511 |
T |
|
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Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 200692 - 200613
Alignment:
| Q |
166 |
aaggtaagggctttt--cctatacgttcgtgctaggaataagtttatgttatgaaataaatattataatatttaaccatt |
243 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||||| |
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|
| T |
200692 |
aaggtaagggttttttccccatacgttcgtgctaggaataaatttatgttatgaaggaaataatgaaatatttaaccatt |
200613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 200552 - 200506
Alignment:
| Q |
330 |
tgtgtcattgattgtgaaatggaatattgtgttagttttgaagatat |
376 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
200552 |
tgtgtgattgattgtgaaatggaatagtgtgttagttttgaaaatat |
200506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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