View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5015-Insertion-12 (Length: 327)
Name: NF5015-Insertion-12
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015-Insertion-12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 40666497 - 40666351
Alignment:
| Q |
8 |
tcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtattttttgaaattctctccaaatcaacctacagagtaaaatcgtaaatgagcaact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40666497 |
tcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtattttttgaaattctctccaaatcaacctacagagtaaaatcgtaaatgagcaact |
40666398 |
T |
|
| Q |
108 |
gaaaatttgaggaaattgaaaacccttattaatactgcaactatcat |
154 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
40666397 |
gaaaatttgaggaaattgaaaaaccttattaatactgcagctatcat |
40666351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 40723509 - 40723629
Alignment:
| Q |
8 |
tcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtattttttgaaattctctccaaatcaacctacagagtaaaatcgtaaatgagcaact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| || | | |
|
|
| T |
40723509 |
tcagtgcaaagagcagcaaggtcagcaccaacatacccatgagtatcttttgaaattctctccaaatcaacctacagag-aaagtcgtaaatgtgcgaat |
40723607 |
T |
|
| Q |
108 |
gaaaatttgaggaaattgaaaa |
129 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
40723608 |
gaaaatttgaggaaatcgaaaa |
40723629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 40666229 - 40666151
Alignment:
| Q |
249 |
aatgcccaacttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctg |
327 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40666229 |
aatgtccaacttacatcatgagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctg |
40666151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 40723818 - 40723896
Alignment:
| Q |
249 |
aatgcccaacttacatcatcagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctg |
327 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40723818 |
aatgtccaacttacatcatgagagagcttcatgtttttggtatgtatgcgaaggacttcaagtcgcccaatttcatctg |
40723896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University