View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5015-Insertion-16 (Length: 340)

Name: NF5015-Insertion-16
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5015-Insertion-16
NF5015-Insertion-16
[»] chr2 (1 HSPs)
chr2 (22-340)||(39283113-39283423)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 39283423 - 39283113
Alignment:
Q  22 aattaattttctcactttaccaacaatctactatatgataaaatttgatcacataaacctgtaaaactcttttatactaaataatgtgcatacgagttgt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39283423 aattaattttctcactttaccaacaatctactatatgataaaatttgatcacataaacctgtaaaactcttttatactaaataatgtgcatacgagttgt 39283324  T
Q  122 tataaaaatcaannnnnnnnnnnnnnnaaaactacacacaatatctgaaggtggttacaaagttgaatatgcaatctctaaaattctccaacctttttcc 221  Q
    ||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39283323 tataaaaatcaaagagagaaaaaaa--aaaactacacacaatatctgaaggtggttacaaagttgaatatgcaatatctaaaattctccaacctttttcc 39283226  T
Q  222 cactgttttaatttcatgccgcttatgatcattgtataatataaacaccttgaaaaactctacaccaccaaagtcatatataataatttaagatagtcac 321  Q
    ||||||     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39283225 cactgt-----tttcatgccgcttatgatcattgtataatataaac-ccttgaaaaactctacaccaccaaagtcatatataataatttaagatagtcac 39283132  T
Q  322 atgttctctactccaccaa 340  Q
    |||||||||||||||||||    
T  39283131 atgttctctactccaccaa 39283113  T

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