View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015-Insertion-18 (Length: 292)
Name: NF5015-Insertion-18
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015-Insertion-18 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 42991505 - 42991666
Alignment:
| Q |
8 |
tcttccacttccttctctgattctgcattgcagagcaacgagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatatata |
107 |
Q |
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| T |
42991505 |
tcttccacttccttctctgattctgcattgcagagcaacgagcttgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatatata |
42991604 |
T |
|
| Q |
108 |
attactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
169 |
Q |
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| T |
42991605 |
attactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaagg |
42991666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 159
Target Start/End: Original strand, 35018237 - 35018349
Alignment:
| Q |
47 |
gagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatatataattactgcaacgatcttaagcgatttccacaaggtattc |
146 |
Q |
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| T |
35018237 |
gagcttgatgcttatggtagaagaagattgagatgggttcaaaagtatttcatgatttataactattgtaatgatcttaagcgattcccacaaggtgttc |
35018336 |
T |
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| Q |
147 |
ctgctgagtgtag |
159 |
Q |
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| T |
35018337 |
ctgttgagtgtag |
35018349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 42993585 - 42993642
Alignment:
| Q |
232 |
atttgtttgccgttgttttaatttattattatgattctttgatttactatcttcctctgta |
292 |
Q |
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| T |
42993585 |
atttgtttgttgttgttttaatttat---tatgattctttgatttactatcttcctctgta |
42993642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 38213998 - 38213792
Alignment:
| Q |
8 |
tcttccacttccttctctgattctgcattgcagagcaacgagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatatata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| || || ||||| |||| |
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| T |
38213998 |
tcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatctata |
38213899 |
T |
|
| Q |
108 |
attactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaaggttctga-gag------atgatgaagaacgtataatagc |
200 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||| ||||||||| |
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| T |
38213898 |
attactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagc |
38213799 |
T |
|
| Q |
201 |
catctta |
207 |
Q |
| |
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||||||| |
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|
| T |
38213798 |
catctta |
38213792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 38218217 - 38218011
Alignment:
| Q |
8 |
tcttccacttccttctctgattctgcattgcagagcaacgagcctgatgcttatggtagaagaagattgagatgggttcagaagtatttcatgatatata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| || || ||||| |||| |
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| T |
38218217 |
tcttccacttccttctctgattctgcattgcaaagcaatgagcttgatgcttatggtagaagaagattgagatgggttcagaaatactttatgatctata |
38218118 |
T |
|
| Q |
108 |
attactgcaacgatcttaagcgatttccacaaggtattcctgctgagtgtaggcgttcaaggttctga-gag------atgatgaagaacgtataatagc |
200 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||| ||||||||| |
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| T |
38218117 |
attactgcaacgatcttaagcgattcccagaaggtattcctgctgagtgtaagcgtccaaggttctgatgagagatcaatgatgaagaacatataatagc |
38218018 |
T |
|
| Q |
201 |
catctta |
207 |
Q |
| |
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||||||| |
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|
| T |
38218017 |
catctta |
38218011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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