View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015-Insertion-19 (Length: 297)
Name: NF5015-Insertion-19
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015-Insertion-19 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 2435665 - 2435955
Alignment:
| Q |
7 |
agcgttgatgtctgacaccaacacaacattgtcactcgtgattgtatacaatcacttctatttttctaaattagtactcgtatgtatgtatccgtatcgt |
106 |
Q |
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| T |
2435665 |
agcgttgatgtctgacaccaacacaacattgtcactcgtgattgtatacaatcacttctatttttctaaattagtactcgtatgtatgtatccgtatcgt |
2435764 |
T |
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| Q |
107 |
gtcagtagtcagttagaatttcttggtaatatgagacactaataactatgggatatcaatttatgtatattaggtactttccagaaggcattgacattta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2435765 |
gtcagtagtcagttagaatttcttggtaatatgagacactaataactatgggatatcaatttatgtatattaggtactttccagaaggcattgacattta |
2435864 |
T |
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| Q |
207 |
ctttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgagagtccatggccgcatacctgtaagtggaatgatctcacag |
297 |
Q |
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| T |
2435865 |
ctttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgagagtccatggccgcatacctgtaagtggaatgatctcacag |
2435955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 157 - 297
Target Start/End: Complemental strand, 2516540 - 2516400
Alignment:
| Q |
157 |
ggatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatga |
256 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||| |
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| T |
2516540 |
ggatatcaatttatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactcttgaatatga |
2516441 |
T |
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| Q |
257 |
gagtccatggccgcatacctgtaagtggaatgatctcacag |
297 |
Q |
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| T |
2516440 |
aactccatggccgcatacctgtgtgtggaatgatctcacag |
2516400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 158 - 297
Target Start/End: Original strand, 2432455 - 2432594
Alignment:
| Q |
158 |
gatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgag |
257 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||| |||||||||| |
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| T |
2432455 |
gatatcaatgtatgtaaattaggtactttccagaaggcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaa |
2432554 |
T |
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| Q |
258 |
agtccatggccgcatacctgtaagtggaatgatctcacag |
297 |
Q |
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| T |
2432555 |
actccatggccgcatacctgtaagtggaatgatctcacag |
2432594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 142 - 297
Target Start/End: Original strand, 2429457 - 2429612
Alignment:
| Q |
142 |
acactaataactatgggatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctg |
241 |
Q |
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||||||||||||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| || || || ||||||||||||| |
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| T |
2429457 |
acactaataactagtagatatcaatttatgtaaactagatactttccagaaggcattgacatttactttgagaatgtggggggaaagacacttgatgctg |
2429556 |
T |
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| Q |
242 |
tacttttgaatatgagagtccatggccgcatacctgtaagtggaatgatctcacag |
297 |
Q |
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|||| |||||||||| | ||||||| || |||||||| ||||||||||||||||| |
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| T |
2429557 |
tactcttgaatatgaaactccatgggcggatacctgtgtgtggaatgatctcacag |
2429612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 190 - 297
Target Start/End: Complemental strand, 2496934 - 2496827
Alignment:
| Q |
190 |
gaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgagagtccatggccgcatacctgtaagtggaatga |
289 |
Q |
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||||||||||| |||||||||||||||||||| || || ||||||||||||||||| ||||| ||||||||||| ||||||||||||| | ||||||||| |
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| T |
2496934 |
gaaggcattgatatttactttgagaatgttggaggcaagacacttgatgctgtactcttgaacatgagagtccacggccgcatacctgcatgtggaatga |
2496835 |
T |
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| Q |
290 |
tctcacag |
297 |
Q |
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|||||||| |
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| T |
2496834 |
tctcacag |
2496827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 297
Target Start/End: Complemental strand, 2505645 - 2505508
Alignment:
| Q |
160 |
tatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgagag |
259 |
Q |
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||||| ||||||| || ||| ||||||||||||||||||| ||||||||||||| || ||||| || ||||||||||| ||||| ||||| |||||| |
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| T |
2505645 |
tatcattttatgtgaatcaggcactttccagaaggcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagat |
2505546 |
T |
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| Q |
260 |
tccatggccgcatacctgtaagtggaatgatctcacag |
297 |
Q |
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| || || ||||||||||| ||||||||||||||||| |
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| T |
2505545 |
tacaaggtcgcatacctgtgtgtggaatgatctcacag |
2505508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 157 - 297
Target Start/End: Complemental strand, 2512269 - 2512129
Alignment:
| Q |
157 |
ggatatcaatttatgtatattaggtactttccagaaggcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatga |
256 |
Q |
| |
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|||||||||||| | | || ||| ||||||||||||| |||||| ||||||||||||| ||||| || || ||||||||||| ||||| ||||| |||| |
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| T |
2512269 |
ggatatcaatttggggaaatcaggcactttccagaaggaattgacgtttactttgagaacgttggaggcaagacacttgatgccgtactcttgaacatga |
2512170 |
T |
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| Q |
257 |
gagtccatggccgcatacctgtaagtggaatgatctcacag |
297 |
Q |
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| | ||||| ||||||||||| ||||||||||||||||| |
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| T |
2512169 |
aactacatggtcgcatacctgtgtgtggaatgatctcacag |
2512129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 2429322 - 2429403
Alignment:
| Q |
17 |
tctgacaccaacacaacattgtcactcgtgattgtatacaatcacttctatttttctaaattagtactcgtatgtatgtatc |
98 |
Q |
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||||||||||||| |||| ||| || ||||||| ||||| ||||||||||||||| |||||| || |||| ||||| |||| |
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| T |
2429322 |
tctgacaccaacataacagcgtctcttgtgattgcatacactcacttctatttttccaaattattattcgtgtgtatttatc |
2429403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 41540465 - 41540512
Alignment:
| Q |
177 |
taggtactttccagaaggcattgacatttactttgagaatgttggtgg |
224 |
Q |
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|||||||||||| ||||| |||||||| |||||||| ||||||||||| |
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| T |
41540465 |
taggtactttcccgaaggaattgacatatactttgacaatgttggtgg |
41540512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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