View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015-Insertion-2 (Length: 1028)
Name: NF5015-Insertion-2
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015-Insertion-2 |
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| [»] scaffold1246 (2 HSPs) |
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Alignment Details
Target: scaffold1246 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: scaffold1246
Description:
Target: scaffold1246; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 413 - 758
Target Start/End: Original strand, 21 - 366
Alignment:
| Q |
413 |
attcaatccttcccttgcctcatgactctttttaggtaagtacttatcaaactcttcattgatagttatctttgcatcatcaaatccgtccttaccaagt |
512 |
Q |
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| T |
21 |
attcaatccttcccttgcctcatgactctttttaggtaagtacttatcaaactcttcattgatagttatctttgcatcatcaaatccgtccttaccaagt |
120 |
T |
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| Q |
513 |
ttttctttaacacattcttgatcttcatcttgactttcaaacttagcccttgtgacacccttttggatgatatctccaaacttggttttttgaacatctt |
612 |
Q |
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| T |
121 |
ttttctttaacacattcttaatcttcatcttgactttcaaacttagcccttgtgacacccttttggatgatatctccaaacttagttttttaaacatctt |
220 |
T |
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| Q |
613 |
cattggcttcaaaaggcaactttttagattcccttccattcatcttcccttcattcctgttagttttctccatttgtggaacctttggttttccaaattc |
712 |
Q |
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| T |
221 |
cattggcttcaaaaggaaactttttagattcccatccattcatcttcccttcattcctgttagttttctccatttgtggaacctttggttttccaaattc |
320 |
T |
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| Q |
713 |
atttaggcttatagaatcaatggtattaggaatatgatcaactaca |
758 |
Q |
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| T |
321 |
atttaggcttatagaatcaatggtattaggaatatgatcaactaca |
366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1246; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 824 - 1028
Target Start/End: Original strand, 432 - 639
Alignment:
| Q |
824 |
cattgacccttcagcaactctttggcttgtatctacaatgttatgtgagatatctttaccaacatctttctctatttctcttgtagagtttaccttacta |
923 |
Q |
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| T |
432 |
cattgacccttcaacaactctttggcttgtatctacaatgttatgtgagatatctttaccaacatctttctctatttctcttgtagagtttaccttacta |
531 |
T |
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| Q |
924 |
tcctcaatcttcaacttagattcttctttttctttttctattgtgcattccgttacgtccctcttaatg-catcgtcct-ctct-ctttttgtatcgtct |
1020 |
Q |
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| T |
532 |
tcctcaatcttcaacttagattcttctttttcattttctattaagcattaagttacatccctcttaatgccatcgtcctccactcctttttgtatagtct |
631 |
T |
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| Q |
1021 |
ctttatta |
1028 |
Q |
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|||||||| |
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| T |
632 |
ctttatta |
639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 13075523 - 13075559
Alignment:
| Q |
9 |
ctagttgtgtctccctcaaaaggttcatttggttcaa |
45 |
Q |
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| T |
13075523 |
ctagttgtgtctccctcaaaaggctcatttggttcaa |
13075559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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