View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5015-Insertion-3 (Length: 895)

Name: NF5015-Insertion-3
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5015-Insertion-3
NF5015-Insertion-3
[»] chr8 (14 HSPs)
chr8 (8-895)||(2497718-2498603)
chr8 (315-497)||(1458713-1458895)
chr8 (315-497)||(2428420-2428602)
chr8 (315-467)||(2517832-2517984)
chr8 (332-467)||(2506972-2507107)
chr8 (315-506)||(2513615-2513806)
chr8 (343-508)||(2434773-2434935)
chr8 (355-508)||(2431388-2431538)
chr8 (14-73)||(2513064-2513123)
chr8 (14-60)||(2506451-2506497)
chr8 (14-76)||(2517424-2517486)
chr8 (8-61)||(2435046-2435099)
chr8 (14-61)||(1458972-1459019)
chr8 (14-61)||(2428679-2428726)
[»] chr3 (1 HSPs)
chr3 (364-490)||(50703456-50703581)


Alignment Details
Target: chr8 (Bit Score: 831; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 831; E-Value: 0
Query Start/End: Original strand, 8 - 895
Target Start/End: Original strand, 2497718 - 2498603
Alignment:
Q  8 aggactgcctagttcaaagaaaccagcataagcagttattcctggcatacctgtgttcacagaaaaacaacatatgttaaaatgcacaacagaatggcag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2497718 aggactgcctagttcaaagaaaccagcataagcagttattcctggcatacctgtgttcacagaaaaacaacatatgttaaaatgcacaacagaatggcag 2497817  T
Q  108 aaaaatatgtgatagtcatcaataataacatatgttgtacaatatcatttgtgaataaaacaaaaacgaacactaatagtgagctattgttggttcctaa 207  Q
    ||||||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2497818 aaaaatatgcgatagtcatcaata---acatatgttgtacaatatcatttgtgaataaaacaaaaacgaacactaatagtgagctattgttggttcctaa 2497914  T
Q  208 cagatagtatccaaggaaatgagtcatttatcccaagaaaaccttcataacatgaggcctgcatatgagactgtaatcaagtgcattcttcaccataaat 307  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2497915 cagatagtatccaaggaaatgagtcatttatcccatgaaaaccttcataacatgaggcctgcatatgagactgtaatcaagtgcattcttcaccataaat 2498014  T
Q  308 caatatgaattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagg 407  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2498015 caatataaattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagg 2498114  T
Q  408 gaccaagctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatcaggatgtcctgattcaaggactttagacaccccaaaacct 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2498115 gaccaagctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatcaggatgtcctgattcaaggactttagacaccccaaaacct 2498214  T
Q  508 gctattacctgcaattactaaaaaattatcagaaacaaaagcttatttcaacattgcatattatttattgattagtttcaaaatttatttaagaataaaa 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  2498215 gctattacctgcaattactaaaaaattatcagaaacaaaagcttatttcaacattgcatattattctttgattagtttcaaaatttatttaagaataaaa 2498314  T
Q  608 cttaaattctactaatctttcaccaaaaaatcccttaaattctaatcacacaaattacaaaattcaagggattttaaacacaactaacataaccacaaaa 707  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2498315 cttaaattctactaatctttcaccaagaaatcccttaaattctaatcacacaaattacaaaattcaagggattttaaacacaactcacataaccacaaaa 2498414  T
Q  708 ccactcataatataaacaaacataatctcagcaaataacataattttatatgcaattta-tttttaaaaactatgatatatcatatccaaaattattaat 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  2498415 ccactcataatataaacaaacataatctcagcaaataacataattttatatgaaatttattttttaaaaactatgatatatcatatccaaaattattaat 2498514  T
Q  807 taatcaactgattagactcaagcggttaataagatacaattaaaggaaagaatccgagttcaaattctaacttgaacaatcattactta 895  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2498515 taatcaagtgattagactcaagcggttaataagatacaattaaaggaaagaatccgagttcaaattctaacttgaacaatcattactta 2498603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 315 - 497
Target Start/End: Complemental strand, 1458895 - 1458713
Alignment:
Q  315 aattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaag 414  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || |||||||||     
T  1458895 aattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctcaattttgaaaagtatttgagctgcagggaccaaa 1458796  T
Q  415 ctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatcaggatgtcctgattcaaggactttagacac 497  Q
    || |||||||||||||||   | |||||||||||||||| ||| ||||||||| |||||||| ||||| |  |||||||||||    
T  1458795 ctatactcttcccatttagtcattccccaaactaaatcatctttcttataatctggatgtccagattctacaactttagacac 1458713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 315 - 497
Target Start/End: Complemental strand, 2428602 - 2428420
Alignment:
Q  315 aattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaag 414  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || |||||||||     
T  2428602 aattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctcaattttgaaaagtatttgagctgcagggaccaaa 2428503  T
Q  415 ctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatcaggatgtcctgattcaaggactttagacac 497  Q
    || ||||||||||| |||   |  ||||||||||||||| ||| ||||||||| |||||||| ||||| |  |||||||||||    
T  2428502 ctatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagattctacaactttagacac 2428420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 315 - 467
Target Start/End: Original strand, 2517832 - 2517984
Alignment:
Q  315 aattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaag 414  Q
    |||||||||||||||| ||||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||||||||||| || ||||| ||||    
T  2517832 aattgaaattgttgaatacataccaagaattccagtatagtacgaaagaggaacatctgtgtgttcaattttgaaaagtatttgagctgcagggatcaag 2517931  T
Q  415 ctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatc 467  Q
    |||||||||||||| |||   || ||||| |||||||||||||||||||||||    
T  2517932 ctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatc 2517984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 332 - 467
Target Start/End: Original strand, 2506972 - 2507107
Alignment:
Q  332 acataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaagctgtactcttcccattt 431  Q
    ||||||| || |||||||||||||||||||| || |||||||| ||||||||||||||| ||||||| |  | ||||| |||||||||||||||||| ||    
T  2506972 acatacctagaattccagtatagtaggaaagaggaacatcagtatgctcaattttgaaatgtatttgtgccgcagggatcaagctgtactcttcccaatt 2507071  T
Q  432 acagaatccccaaactaaatcaccttccttataatc 467  Q
    |   |  ||||| |||| ||||||||||||||||||    
T  2507072 agttatcccccacactatatcaccttccttataatc 2507107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 315 - 506
Target Start/End: Original strand, 2513615 - 2513806
Alignment:
Q  315 aattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaag 414  Q
    |||||||||||| ||  ||||||| || ||||| |||||||||||||| || |||||||||||||||||||| ||| ||||||| | || ||||| ||||    
T  2513615 aattgaaattgtggatcacataccaagaattcctgtatagtaggaaagaggaacatcagtgtgctcaattttaaaatgtatttgtgctgcagggatcaag 2513714  T
Q  415 ctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatcaggatgtcctgattcaaggactttagacaccccaaaacc 506  Q
    |||||||||||||| |||   |  ||||| || | ||||||||| ||||||||    ||||| ||||| || ||||||||||| ||| ||||    
T  2513715 ctgtactcttcccaattagttatcccccacacgatatcaccttctttataatctttgtgtccagattctagaactttagacacaccataacc 2513806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 343 - 508
Target Start/End: Complemental strand, 2434935 - 2434773
Alignment:
Q  343 attccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaagctgtactcttcccatttacagaatcccc 442  Q
    ||||| ||||| |||||||||||||||||| |||||||||||||||||   |||  || || ||| ||||| || |||||||||||||||   |  | ||    
T  2434935 attccggtataataggaaagtgggacatcattgtgctcaattttgaaa---attccagttgtaggaaccaaactatactcttcccatttagtaagactcc 2434839  T
Q  443 aaactaaatcaccttccttataatcaggatgtcctgattcaaggactttagacaccccaaaacctg 508  Q
    ||||| ||||| ||| ||||||||| |||||||| ||||| |  ||||||||||| ||||||||||    
T  2434838 aaactgaatcatctttcttataatctggatgtccagattctacaactttagacactccaaaacctg 2434773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 355 - 508
Target Start/End: Complemental strand, 2431538 - 2431388
Alignment:
Q  355 taggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaagctgtactcttcccatttacagaatccccaaactaaatcac 454  Q
    |||||||||||||||||| |||||||||||||| | |   ||  || || ||||||||| || ||||||||||| |||   |  |||||||||||||||     
T  2431538 taggaaagtgggacatcattgtgctcaattttgtaca---ttccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcat 2431442  T
Q  455 cttccttataatcaggatgtcctgattcaaggactttagacaccccaaaacctg 508  Q
    ||| ||||||||| |||||||| ||||| |  ||||||||||| ||||||||||    
T  2431441 ctttcttataatctggatgtccagattctacaactttagacactccaaaacctg 2431388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 2513064 - 2513123
Alignment:
Q  14 gcctagttcaaagaaaccagcataagcagttattcctggcatacctgtgttcacagaaaa 73  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||    
T  2513064 gcctacttcaaagaaaccagaataagcagtcattcctggcatacctgttttcagagaaaa 2513123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 2506451 - 2506497
Alignment:
Q  14 gcctagttcaaagaaaccagcataagcagttattcctggcatacctg 60  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  2506451 gcctacttcaaagaaaccagcataagcagtcattcctggcatacctg 2506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 2517424 - 2517486
Alignment:
Q  14 gcctagttcaaagaaaccagcataagcagttattcctggcatacctgtgttcacagaaaaaca 76  Q
    ||||| ||||||||||||||||||||| || |||||||||||||||||| ||| | |||||||    
T  2517424 gcctacttcaaagaaaccagcataagcggtcattcctggcatacctgtgctcaaacaaaaaca 2517486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 2435099 - 2435046
Alignment:
Q  8 aggactgcctagttcaaagaaaccagcataagcagttattcctggcatacctgt 61  Q
    ||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||    
T  2435099 aggactgcctaattcaaagaaaccagcatatgcagtcattcccggcatacctgt 2435046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 1459019 - 1458972
Alignment:
Q  14 gcctagttcaaagaaaccagcataagcagttattcctggcatacctgt 61  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||||    
T  1459019 gcctacttcaaagaaaccagcataagcagtcattccaggcatacctgt 1458972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 2428726 - 2428679
Alignment:
Q  14 gcctagttcaaagaaaccagcataagcagttattcctggcatacctgt 61  Q
    ||||| |||||||||||||||||||||||| ||||| |||||||||||    
T  2428726 gcctacttcaaagaaaccagcataagcagtcattccaggcatacctgt 2428679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 364 - 490
Target Start/End: Original strand, 50703456 - 50703581
Alignment:
Q  364 gggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaagctgtactcttcccatttacagaatccccaaactaaatcaccttccttat 463  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50703456 gggacatcagtgtgctcaattttgaaaagtatttgagat-aaggtaccaagctgtactcttcccatttacagaatccccaaacttaatcaccttccttat 50703554  T
Q  464 aatcaggatgtcctgattcaaggactt 490  Q
    ||||||||| |||||||||||||||||    
T  50703555 aatcaggatatcctgattcaaggactt 50703581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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