View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015-Insertion-4 (Length: 639)
Name: NF5015-Insertion-4
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 23368754 - 23368978
Alignment:
| Q |
8 |
atcatagatatcaatgatatcttacggcatcgtcctatttggaaacaataattatgctaatcacatcaagataaactccaattttaacaacattgttgtt |
107 |
Q |
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| T |
23368754 |
atcatagatatcaatgatatcttacggcatcgtcctatttggaaacaataattatgctaatcacatcaagataagctccaattttaacgacaatgttgtt |
23368853 |
T |
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| Q |
108 |
ctcaagtaatgtgcgtagctaatcaagttgaatgttatttaacaaaatttgcaatttcttccaactatgattatgtttggatttaggagattccatattg |
207 |
Q |
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| T |
23368854 |
ctcaagtaatgtgtgtcgctaatcaagttgaatgttatttagcaaaatttgcaatttcttccaactatgattatgtttggatttaggagattccatattg |
23368953 |
T |
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| Q |
208 |
taattccgaggttgtagcatttgat |
232 |
Q |
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| T |
23368954 |
taattccgaggttgtagcatttgat |
23368978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 505 - 603
Target Start/End: Original strand, 23369404 - 23369503
Alignment:
| Q |
505 |
ttaatctaatacgcgaacaaatttgaaacaaaatgttagaattaccgtgttaaatgacta-ttttttaatatttggagcaattttacctatttgtatata |
603 |
Q |
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| T |
23369404 |
ttaatctaatacgcgaacaaatttgaaacaaaatgttagaattaccgtgttaaatgactatttttttaacatttggagaaattttacctatttgtatata |
23369503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 407 - 509
Target Start/End: Original strand, 23369113 - 23369215
Alignment:
| Q |
407 |
attgagtttaatcccctacatatgaggttattattagggggtccccattcataggagaaaattggcatccctatatagggttatatctaagatcctgatt |
506 |
Q |
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| T |
23369113 |
attgagtttaaccccctacatatgaggttattattaggggtcccccattcataggagaaaattggcatccctatatagggttgtatctaagttcctgatt |
23369212 |
T |
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| Q |
507 |
aat |
509 |
Q |
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||| |
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| T |
23369213 |
aat |
23369215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 23368969 - 23369010
Alignment:
| Q |
255 |
agcatttgatatattgttggaatctctttaagtaatatttgc |
296 |
Q |
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| T |
23368969 |
agcatttgatatattgttggaatctctttaaggaatatttgc |
23369010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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